Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I07
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical
           protein D1014.2 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = -3

Query: 221 LLKVPMEFKVNN*RNSKFSKIHWNFYIVTMYMWLINNV*IRWVICRLGGNTTLIEVVL 48
           L+K+ + F++N   N+  + + W+   + + M+L + V I  +I   GGN   + V+L
Sbjct: 40  LIKIRLLFQMNASTNATTTFVPWDHKTLQIVMFLNSKVLILQIIFGCGGNILNLMVLL 97


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 60  YQRCVSSQSTNYPTDSNVVY 119
           Y  C+SSQST  P +SN VY
Sbjct: 286 YGYCISSQSTVNPCNSNQVY 305


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 325 KYMKSIKSKGSTTHPLTPKHKNQRWLMRFD 236
           +YMK IKSKG   H +  + K ++ L  FD
Sbjct: 197 RYMKKIKSKG--YHRILKREKRKQLLKEFD 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,932,049
Number of Sequences: 27780
Number of extensions: 166698
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)