Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I07
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    28   2.4  
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    28   2.4  
At5g13210.1 68418.m01516 expressed protein                             28   3.1  
At4g29920.1 68417.m04257 heat shock protein-related contains sim...    27   7.2  

>At2g28290.2 68415.m03434 chromatin remodeling protein, putative
           (SYD) similar to transcriptional activator HBRM [Homo
           sapiens] GI:414117; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain; identical to cDNA putative
           chromatin remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 227 FQLLKVPMEFKVNN*RNSKFSKIHWNFYIV 138
           F +L    E+ +N     K SKIHW++ I+
Sbjct: 854 FNVLLTTYEYLMNKHDRPKLSKIHWHYIII 883


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative
           (SYD) similar to transcriptional activator HBRM [Homo
           sapiens] GI:414117; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain; identical to cDNA putative
           chromatin remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 227 FQLLKVPMEFKVNN*RNSKFSKIHWNFYIV 138
           F +L    E+ +N     K SKIHW++ I+
Sbjct: 854 FNVLLTTYEYLMNKHDRPKLSKIHWHYIII 883


>At5g13210.1 68418.m01516 expressed protein
          Length = 673

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 283 PLTPKHKNQRWLM-RFDFDFFNYLKFLWNSR 194
           P TPKH  ++WL   +D D    LK + N R
Sbjct: 80  PSTPKHSLEQWLQGAWDHDALTTLKLICNLR 110


>At4g29920.1 68417.m04257 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 1017

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/31 (32%), Positives = 23/31 (74%)
 Frame = -2

Query: 117 KQRLNPLGNLSIGRKHNVDRSSIMV*DNVTL 25
           ++  NP+  + +G+K+N  R++++V D+V+L
Sbjct: 254 REDANPVIEVLLGKKNNKKRNTVIVGDSVSL 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,125,695
Number of Sequences: 28952
Number of extensions: 143016
Number of successful extensions: 235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)