Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I05
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 50 1e-07
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 48 1e-06
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 46 2e-06
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 2.5
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 25 4.5
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 4.5
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 4.5
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 4.5
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 50.4 bits (115), Expect = 1e-07
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +1
Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 366
EP W +FAKALEG ++++L+ NIGS
Sbjct: 39 EPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEE 98
Query: 367 XXDDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
Score = 33.1 bits (72), Expect = 0.022
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 78 SKAELACVYSALILVDDDVAVTGEKISTILK 170
S +ELA YSALIL D+ + +T +K+ ++ K
Sbjct: 2 SASELATSYSALILADEGIEITSDKLLSLTK 32
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 47.6 bits (108), Expect = 1e-06
Identities = 25/72 (34%), Positives = 32/72 (44%)
Frame = +1
Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 366
EP W +FAKALEG ++++L+ NIGSG
Sbjct: 39 EPIWATIFAKALEGKDLKELLLNIGSG-AGAAPVAGGAAAPAAADGEAPAEEKEEAKEEE 97
Query: 367 XXDDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 98 ESDEDMGFGLFD 109
Score = 33.1 bits (72), Expect = 0.022
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 78 SKAELACVYSALILVDDDVAVTGEKISTILK 170
S +ELA YSALIL D+ + +T +K+ ++ K
Sbjct: 2 SASELATSYSALILADEGIEITSDKLLSLTK 32
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 46.4 bits (105), Expect = 2e-06
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +1
Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 366
EP W +FAKALEG ++++L+ NIGS
Sbjct: 39 EPIWATIFAKALEGKDLKELLLNIGS-AGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEE 97
Query: 367 XXDDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 98 ESDEDMGFGLFD 109
Score = 31.9 bits (69), Expect = 0.051
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 78 SKAELACVYSALILVDDDVAVTGEKISTILK 170
S +ELA Y+ALIL D+ + +T +K+ ++ K
Sbjct: 2 SASELATSYAALILADEGIEITSDKLLSLTK 32
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -1
Query: 269 TPDPML---VIKSRTLMPSKAFANRPGQYGSHYS 177
+P+P+ IK PSK F NRP ++ SH S
Sbjct: 297 SPEPIFNNRFIKIFWYNPSKGFHNRPKKFASHKS 330
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,895
Number of Sequences: 5004
Number of extensions: 21321
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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