Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I05
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    53   1e-07
07_03_0260 + 15928932-15929255,15930174-15930347                       27   7.7  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 27/72 (37%), Positives = 30/72 (41%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 366
           E YWPGLFAK LE  +V DLI ++GSG                                 
Sbjct: 39  EAYWPGLFAKLLEHRSVDDLILSVGSGGGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKE 98

Query: 367 XXDDDMGFGLFD 402
             DDDMGF LFD
Sbjct: 99  ESDDDMGFSLFD 110



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +3

Query: 78  SKAELACVYSALILVDDDVAVTGEKISTILK 170
           S +E+AC  +ALIL DD + +T EKI+T++K
Sbjct: 2   SSSEVACTLAALILHDDGIPITSEKIATLVK 32


>07_03_0260 + 15928932-15929255,15930174-15930347
          Length = 165

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 111 GRSKHKLIQLLMPF*MLYVQVAKR 40
           GR+ HKL+Q+ +PF +L V  A R
Sbjct: 119 GRATHKLLQMYVPFAVLAVIAALR 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,750,689
Number of Sequences: 37544
Number of extensions: 156199
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)