Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I05
         (473 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    53   6e-07
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                53   6e-07
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    53   6e-07
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    53   6e-07
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    53   6e-07
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                51   2e-06
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    50   3e-06

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 357
           EP+WPGLFAKAL  +N+  LI N+G+G                                 
Sbjct: 40  EPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKE 99

Query: 358 XXXXXDDDMGFGLFD 402
                DDDMGFGLFD
Sbjct: 100 ESEESDDDMGFGLFD 114



 Score = 47.2 bits (107), Expect = 3e-05
 Identities = 21/33 (63%), Positives = 28/33 (84%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           MAS +ELAC+YSALIL DD+V VT +KI+ ++K
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIK 33


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 357
           EP+WPGLFAKAL  +N+  LI N+G+G                                 
Sbjct: 40  EPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKE 99

Query: 358 XXXXXDDDMGFGLFD 402
                DDDMGFGLFD
Sbjct: 100 ESEESDDDMGFGLFD 114



 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 20/33 (60%), Positives = 28/33 (84%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           MAS +ELAC+YSAL+L DD+V VT +KI+ ++K
Sbjct: 1   MASVSELACIYSALVLHDDEVTVTEDKINALIK 33


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 357
           EP+WPGLFAKAL  +N+  LI N+G+G                                 
Sbjct: 40  EPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKE 99

Query: 358 XXXXXDDDMGFGLFD 402
                DDDMGFGLFD
Sbjct: 100 ESEESDDDMGFGLFD 114



 Score = 47.2 bits (107), Expect = 3e-05
 Identities = 21/33 (63%), Positives = 28/33 (84%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           MAS +ELAC+YSALIL DD+V VT +KI+ ++K
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIK 33


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 357
           EP+WPGLFAKAL  +N+  LI N+G+G                                 
Sbjct: 40  EPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKE 99

Query: 358 XXXXXDDDMGFGLFD 402
                DDDMGFGLFD
Sbjct: 100 ESEESDDDMGFGLFD 114



 Score = 47.2 bits (107), Expect = 3e-05
 Identities = 21/33 (63%), Positives = 28/33 (84%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           MAS +ELAC+YSALIL DD+V VT +KI+ ++K
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIK 33


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 357
           EP+WPGLFAKAL  +N+  LI N+G+G                                 
Sbjct: 40  EPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKE 99

Query: 358 XXXXXDDDMGFGLFD 402
                DDDMGFGLFD
Sbjct: 100 ESEESDDDMGFGLFD 114



 Score = 47.2 bits (107), Expect = 3e-05
 Identities = 21/33 (63%), Positives = 28/33 (84%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           MAS +ELAC+YSALIL DD+V VT +KI+ ++K
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIK 33


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 357
           EP+WPGLFAKAL  +N+  LI ++G+G                                 
Sbjct: 40  EPFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKE 99

Query: 358 XXXXXDDDMGFGLFD 402
                DDDMGFGLFD
Sbjct: 100 ESEESDDDMGFGLFD 114



 Score = 42.3 bits (95), Expect = 8e-04
 Identities = 20/33 (60%), Positives = 27/33 (81%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           MAS +ELA +YSALIL DD+V VT +KI+ ++K
Sbjct: 1   MASVSELARIYSALILHDDEVTVTEDKINALIK 33


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 357
           EP+WPGLFAKAL  +N+  LI N+G+G                                 
Sbjct: 40  EPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKE 99

Query: 358 XXXXXDDDMGFGLF 399
                DDDMGFGLF
Sbjct: 100 ESEESDDDMGFGLF 113



 Score = 47.2 bits (107), Expect = 3e-05
 Identities = 21/33 (63%), Positives = 28/33 (84%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           MAS +ELAC+YSALIL DD+V VT +KI+ ++K
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIK 33


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,662,067
Number of Sequences: 237096
Number of extensions: 841032
Number of successful extensions: 1320
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)