Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I05
         (473 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    68   7e-12
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    68   7e-12
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    68   7e-12
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    65   4e-11
AY061562-1|AAL29110.1|  249|Drosophila melanogaster LP11415p pro...    29   4.2  
AE014298-1718|AAF48118.1|  249|Drosophila melanogaster CG2471-PA...    29   4.2  
AY075346-1|AAL68207.1| 1052|Drosophila melanogaster GH20978p pro...    28   7.4  
AE014296-1367|AAN12011.1| 1052|Drosophila melanogaster CG7915-PB...    28   7.4  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 37/73 (50%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGV-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 363
           EPYWPGLFAKALEGINV+DLITNIGSGV                                
Sbjct: 40  EPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEES 99

Query: 364 XXXDDDMGFGLFD 402
              DDDMGFGLFD
Sbjct: 100 DQSDDDMGFGLFD 112



 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 28/33 (84%), Positives = 33/33 (100%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           M++KAELACVY++LILVDDDVAVTGEKI+TILK
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILK 33


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 37/73 (50%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGV-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 363
           EPYWPGLFAKALEGINV+DLITNIGSGV                                
Sbjct: 40  EPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEES 99

Query: 364 XXXDDDMGFGLFD 402
              DDDMGFGLFD
Sbjct: 100 DQSDDDMGFGLFD 112



 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 28/33 (84%), Positives = 33/33 (100%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           M++KAELACVY++LILVDDDVAVTGEKI+TILK
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILK 33


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 37/73 (50%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGV-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 363
           EPYWPGLFAKALEGINV+DLITNIGSGV                                
Sbjct: 40  EPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEES 99

Query: 364 XXXDDDMGFGLFD 402
              DDDMGFGLFD
Sbjct: 100 DQSDDDMGFGLFD 112



 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 28/33 (84%), Positives = 33/33 (100%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           M++KAELACVY++LILVDDDVAVTGEKI+TILK
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILK 33


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 36/73 (49%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGV-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 363
           EPYWPGLFAKALE INV+DLITNIGSGV                                
Sbjct: 40  EPYWPGLFAKALEAINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEES 99

Query: 364 XXXDDDMGFGLFD 402
              DDDMGFGLFD
Sbjct: 100 DQSDDDMGFGLFD 112



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/33 (81%), Positives = 32/33 (96%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           M++KAELA VY++LILVDDDVAVTGEKI+TILK
Sbjct: 1   MSTKAELASVYASLILVDDDVAVTGEKINTILK 33


>AY061562-1|AAL29110.1|  249|Drosophila melanogaster LP11415p
           protein.
          Length = 249

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 39  AFWRLARITFKMASKAELACVYSALILVDDDVAVTGEKISTI 164
           +F  L ++ FK+ S A L    +A++ +D D A+T + ++ +
Sbjct: 174 SFIVLPQVVFKLQSLASLDAQNNAILEIDTDEAITSDNLALV 215


>AE014298-1718|AAF48118.1|  249|Drosophila melanogaster CG2471-PA
           protein.
          Length = 249

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 39  AFWRLARITFKMASKAELACVYSALILVDDDVAVTGEKISTI 164
           +F  L ++ FK+ S A L    +A++ +D D A+T + ++ +
Sbjct: 174 SFIVLPQVVFKLQSLASLDAQNNAILEIDTDEAITSDNLALV 215


>AY075346-1|AAL68207.1| 1052|Drosophila melanogaster GH20978p
           protein.
          Length = 1052

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 226 PPRPLQIDQASTAHITAAAFSMVEIFSPVTATSSST 119
           PP+P+Q+   ST   T +  S   +     +TSSS+
Sbjct: 57  PPQPIQVVAGSTTATTMSTASAARVSGAAASTSSSS 92


>AE014296-1367|AAN12011.1| 1052|Drosophila melanogaster CG7915-PB,
           isoform B protein.
          Length = 1052

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 226 PPRPLQIDQASTAHITAAAFSMVEIFSPVTATSSST 119
           PP+P+Q+   ST   T +  S   +     +TSSS+
Sbjct: 57  PPQPIQVVAGSTTATTMSTASAARVSGAAASTSSSS 92


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,046,777
Number of Sequences: 53049
Number of extensions: 254699
Number of successful extensions: 604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)