Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I05
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    66   2e-11
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    62   2e-10
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...    27   6.9  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 30/72 (41%), Positives = 36/72 (50%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 366
           EPYWPGLFAKALEG++V++LIT++ SG                                 
Sbjct: 40  EPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKE 99

Query: 367 XXDDDMGFGLFD 402
             DDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111



 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LK
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLK 33


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 29/72 (40%), Positives = 35/72 (48%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 366
           EP WPGLFAKALEG++V++LIT++ SG                                 
Sbjct: 40  EPNWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKE 99

Query: 367 XXDDDMGFGLFD 402
             DDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111



 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LK
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLK 33


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 373 DDDMGFGLFD 402
           DDDMGFGLFD
Sbjct: 303 DDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 373 DDDMGFGLFD 402
           DDDMGFGLFD
Sbjct: 98  DDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 373 DDDMGFGLFD 402
           DDDMGFGLFD
Sbjct: 101 DDDMGFGLFD 110


>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 257 MLVIKSRTLMPSKAFANRPGQYGSHYSSRFQYG 159
           M+V+ +R+L+P+  FA+R     +  S+RFQ G
Sbjct: 1   MVVLVTRSLLPALFFASRAPFAAATTSARFQRG 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,109,194
Number of Sequences: 27780
Number of extensions: 122129
Number of successful extensions: 231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)