Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I05
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    44   7e-05
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    44   7e-05
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       43   9e-05
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    43   9e-05
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    43   9e-05
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     40   0.001
At1g07380.1 68414.m00787 ceramidase family protein contains simi...    28   2.8  
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil...    27   4.9  

>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXX 363
           E YWP LFAK  E  NV DLI N+G+G                                 
Sbjct: 40  ESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPA 99

Query: 364 XXXDDDMGFGLFD 402
              D D+GFGLFD
Sbjct: 100 EESDGDLGFGLFD 112



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/33 (45%), Positives = 26/33 (78%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           M++  ELAC Y+ +IL D+ +A+T +KI+T++K
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVK 33


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXX 363
           E YWP LFAK  E  NV DLI N+G+G                                 
Sbjct: 40  ESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPA 99

Query: 364 XXXDDDMGFGLFD 402
              D D+GFGLFD
Sbjct: 100 EESDGDLGFGLFD 112



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/33 (45%), Positives = 26/33 (78%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           M++  ELAC Y+ +IL D+ +A+T +KI+T++K
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVK 33


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXX 360
           E YWP LFAK  E  NV DLI N+G+G                                 
Sbjct: 40  ESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEP 99

Query: 361 XXXXDDDMGFGLFD 402
               D D+GFGLFD
Sbjct: 100 AEESDGDLGFGLFD 113



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/33 (45%), Positives = 26/33 (78%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           M++  ELAC Y+ +IL D+ +A+T +KI+T++K
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVK 33


>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXX 360
           E YWP LFAK  E  NV DLI N+G+G                                 
Sbjct: 40  ESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEP 99

Query: 361 XXXXDDDMGFGLFD 402
               D D+GFGLFD
Sbjct: 100 AEESDGDLGFGLFD 113



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/33 (45%), Positives = 26/33 (78%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           M++  ELAC Y+ +IL D+ +A+T +KI+T++K
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVK 33


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXX 360
           E YWP LFAK  E  NV DLI N+G+G                                 
Sbjct: 40  ESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEP 99

Query: 361 XXXXDDDMGFGLFD 402
               D D+GFGLFD
Sbjct: 100 AEESDGDLGFGLFD 113



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/33 (45%), Positives = 26/33 (78%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILK 170
           M++  ELAC Y+ +IL D+ +A+T +KI+T++K
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVK 33


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +3

Query: 78  SKAELACVYSALILVDDDVAVTGEKISTILK 170
           S +ELAC Y+ALIL DD + +T E IS ++K
Sbjct: 2   STSELACTYAALILHDDGIEITAENISKLVK 32



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +1

Query: 187 EPYWPGLFAKALEGINVRDLITNIGSG 267
           E YWP LFAK  E  N+ DLI N+G+G
Sbjct: 39  ESYWPSLFAKLCEKKNIDDLIMNVGAG 65


>At1g07380.1 68414.m00787 ceramidase family protein contains
           similarity to mitochondrial ceramidase [Homo sapiens]
           gi|9246993|gb|AAF86240
          Length = 779

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 42  FWRLARITFKMASKAELACVYSALILVD 125
           FWRL R   K   K ++ C Y   IL+D
Sbjct: 479 FWRLVRNVLKTPDKKQIDCHYPKPILLD 506


>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin 2
            (VLN2) [Arabidopsis thaliana] GI:3415115
          Length = 976

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -2

Query: 226  PPRPLQIDQASTAHITAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAFDAILNVIRASR 47
            PPRP+   QAS      AA S V +     +  +S   R+  T +N A D  L   +   
Sbjct: 816  PPRPVGTSQASQRAAAVAALSQVLVAENKKSPDTSPTRRS--TSSNPADDIPLTEAKDEE 873

Query: 46   QKALAQGEQAR 14
            + +   G +A+
Sbjct: 874  EASEVAGLEAK 884


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,754,525
Number of Sequences: 28952
Number of extensions: 118510
Number of successful extensions: 235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)