Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I04
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.2  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +2

Query: 404 VDSVLDVVRNEAESCDCL 457
           +DS+++++R   ++CD L
Sbjct: 106 IDSIINIIRVRVDACDRL 123


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 426 FAMKQSHVIVYNDSNSHTP 482
           FA   SH I+Y  +  H P
Sbjct: 254 FAGLHSHTIIYLSAKGHRP 272


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 67  NEGNRAHPGRTMRKPD 114
           NE N   PGR   KP+
Sbjct: 391 NESNITWPGRLQTKPE 406


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 182 DSDLQLERINVYYNEASGGKYV 247
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 355 AGLSENEVVGAEDLSE 308
           AGL+E EVV A+ ++E
Sbjct: 62  AGLTEEEVVLAKTIAE 77


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 87  SRPDNAETRLELSSGRSSPMSTAS 158
           SRP + E R    S + SP++ AS
Sbjct: 347 SRPSDKEEREAQKSQKPSPVTGAS 370


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 123 SSGRSSPMSTASTPP 167
           ++G +SPMST+S  P
Sbjct: 129 NNGYASPMSTSSYDP 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,226
Number of Sequences: 438
Number of extensions: 2195
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)