Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I03
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    68   6e-13
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    66   2e-12
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.28 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   0.49 
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   0.85 
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   6.0  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   6.0  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    24   7.9  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 67.7 bits (158), Expect = 6e-13
 Identities = 31/64 (48%), Positives = 48/64 (75%)
 Frame = +3

Query: 135 LFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 314
           +FDK   +++ KEVP +K I+ +V+ +R+KI GSLAR A+ +L ++G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 315 YTRA 326
           YTRA
Sbjct: 81  YTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 30/63 (47%), Positives = 47/63 (74%)
 Frame = +3

Query: 135 LFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 314
           +FDK   +++ KEVP +K I+ +V+ +R+KI GSLAR A+ +L ++G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 315 YTR 323
           YTR
Sbjct: 81  YTR 83


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 163  SFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFW 44
            SF Y  L NN++L  +S +   ++ F++  PPP  S+  W
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP-KSYLSW 1046


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 362  SIILSNRVISLSRSCVDHLPMVL 294
            +I L+N + SL+R C D+LPM L
Sbjct: 1956 AIFLANMINSLNRGCNDYLPMDL 1978


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 196 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPFDHFFFLALPPP 65
           V+ + C  +L  F ++ G+ N         T PF +F+ L  PPP
Sbjct: 37  VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 213 QRQQRV*SACTVVLPYTVSHMWV 145
           Q+Q R+     +VLP+TV  +W+
Sbjct: 75  QKQWRILRITFLVLPFTVGGLWI 97


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 210 SERLKIRGSLARRALVELRDKGLIKQVVQHHGQVIY 317
           +ERL +  ++ R ALVEL+   LIKQ      QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 141 DKPTYEKLYKEVPQYKLITPAVVSERLK--IRGSLARRALVELRDKGLI 281
           +K  YE L K    Y       VS  LK  +   +A++AL +LRD GLI
Sbjct: 18  EKLVYEYLRKTNRPYSATD---VSANLKNVVSKQVAQKALEQLRDTGLI 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,507
Number of Sequences: 5004
Number of extensions: 23678
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)