Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I03
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 95 1e-20
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 93 8e-20
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 1e-08
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 31 0.27
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 29 1.1
02_03_0349 + 18010414-18014283 29 1.4
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 28 3.3
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 27 4.3
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 27 5.7
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 95.5 bits (227), Expect = 1e-20
Identities = 45/70 (64%), Positives = 56/70 (80%)
Frame = +3
Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 299
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL+I GSLARRA+ +L D+GLI+ V H
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMVSVH 96
Query: 300 HGQVIYTRAT 329
Q IYTRAT
Sbjct: 97 CSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 93.1 bits (221), Expect = 8e-20
Identities = 44/70 (62%), Positives = 55/70 (78%)
Frame = +3
Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 299
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL+I GSLARRA+ +L +GLI+ V H
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 96
Query: 300 HGQVIYTRAT 329
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3
Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 224
+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 225 IRGSLARRALVELRDKGLIKQVVQHHGQVIYTRAT 329
I GSLAR+A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 31.5 bits (68), Expect = 0.27
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 192 ITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVIYTRATKGD 338
+TPAV E+ + + AR+ L + R+ I+ +QH+ Q+++ +K D
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +3
Query: 189 LITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVIYTRATKGD 338
++TPA E+ + + A++ LVE R++ I+ +Q + Q+++ +K D
Sbjct: 167 VLTPAAYFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLD 216
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 144 KPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRD 269
KPT E+L K +PQ K++ AV E + + L +LRD
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHIGDQSDALDAWLWQLRD 80
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 8 GHKGLG*AAAEDPKEEGGIRWRQSQEEEVVKR 103
G KG A A PKE+GG + ++ +EEE K+
Sbjct: 550 GWKGREVALAPWPKEKGGRKQKREEEEEEEKK 581
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 100 FDHFFFLALPPPDPSFFFWVFCGCLAEAF 14
F FF +PPP +F WV G L F
Sbjct: 313 FVEVFFTKIPPPQNNFCSWVGEGALEAGF 341
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 225 IRGSLARRALVELRDKGLIKQVVQHHGQVIYT 320
IRG +RAL +R G I++VVQ+ Q Y+
Sbjct: 239 IRGIGGQRALKLIRQHGYIEEVVQNLSQTRYS 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,282,262
Number of Sequences: 37544
Number of extensions: 165658
Number of successful extensions: 433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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