Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I03
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              125   1e-29
SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)                   27   7.8  
SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   7.8  
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)                27   7.8  
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)                  27   7.8  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  125 bits (302), Expect = 1e-29
 Identities = 59/74 (79%), Positives = 67/74 (90%)
 Frame = +3

Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 299
           LNN VLFDK TY+KLYKEVP Y+LITP+VVSERLKIRGSLARRAL+EL+ KGLIK+V +H
Sbjct: 41  LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKH 100

Query: 300 HGQVIYTRATKGDD 341
           H Q+IYTRATKG D
Sbjct: 101 HSQLIYTRATKGAD 114


>SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 231 LGSSTFQRQQRV*SACTVVLPYTVSHMWVCQTTLGCLTCHGL 106
           +G S++ R   + S C  ++ Y  SH  V   + GCL   GL
Sbjct: 175 IGLSSYHRAVFLSSGCLPIIGYPTSHRRVVFPSSGCLPIIGL 216


>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 169 LYSFSYVGLSNNTWLFNLSRTFPF-DHFFFLALPPPDPSFFFWVFCGCLAE 20
           LYS++ VG++     F L       +HF+      P P+ F  V+C  L E
Sbjct: 604 LYSYAIVGINITGMAFRLLEDGSLRNHFYNCKHDKPSPTDFHEVYCYLLYE 654


>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 184 YCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLA-LPPPDPSFFFWVF 38
           Y  TS ++F Y   SN+T+ +  + +  F + F  A +P   PS     F
Sbjct: 57  YAFTSNHTFHYTFTSNHTFHYTFTSSHTFHYAFTKAIIPSTTPSLVIITF 106


>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
          Length = 1044

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 290 YLFD*TFISKFDKCSPGKGASDLQPFRDNSGCDQLVLWYFLIQFLIC 150
           Y  D +++ K   CSPG   +DL+ F     C  L  ++ L +F +C
Sbjct: 172 YKIDGSYLEKCTDCSPG---TDLKKFAGFRACPCLPGYFRLDRFGLC 215


>SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/42 (45%), Positives = 20/42 (47%)
 Frame = -1

Query: 166 YSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWV 41
           YS S  G + N   F LSR    DH FFL  P P   F  WV
Sbjct: 194 YSVSPYGWAYN---FMLSRA---DHMFFLFSPVPIEWFTLWV 229


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 175 TSLYSFSYVGLSNNTWLFNLSRTFPFDH 92
           +SL+     G+SN+ WL N S T P +H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 257  DKCSPG-KGASDLQPFRDNSGCDQLVL 180
            +KC PG +GA  L   R N+GC + V+
Sbjct: 1488 NKCVPGVRGAECLPGMRGNNGCPECVV 1514


>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
          Length = 912

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -2

Query: 177 VLPYTVSHMWVCQTTLGCLTCHGLFLLTTSSSWLCRHR 64
           +LP+     W      G   CH L + T    W C H+
Sbjct: 524 ILPWIKLQDWEAARKTGKQVCHLLSICTLIRPWACLHQ 561


>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
          Length = 776

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 88  FFLALPPPDPSFFFWVFCGC 29
           +F+ALPP +P  +   FC C
Sbjct: 528 YFVALPPHEPQVYKGEFCHC 547


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,286
Number of Sequences: 59808
Number of extensions: 189303
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)