Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I03
         (409 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   147   6e-36
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   147   6e-36
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   147   6e-36
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...   144   3e-35
X68259-1|CAA48327.1|  464|Drosophila melanogaster elg protein.         31   0.44 
BT025224-1|ABF17915.1|  464|Drosophila melanogaster FI01018p pro...    31   0.44 
AY070960-1|AAL48582.1|  394|Drosophila melanogaster RE06142p pro...    31   0.44 
AE014297-4021|AAF56638.1|  464|Drosophila melanogaster CG6338-PA...    31   0.44 

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  147 bits (356), Expect = 6e-36
 Identities = 74/112 (66%), Positives = 81/112 (72%)
 Frame = +3

Query: 6   RDTKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEVPQY 185
           +D K+SAKQPQ                           LNNQVLFDK TYEKLYKEVP Y
Sbjct: 5   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 64

Query: 186 KLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVIYTRATKGDD 341
           KLITP+VVSERLKIRGSLA+RAL+ELR+KGLIKQVVQHH QVIYTRATKGD+
Sbjct: 65  KLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  147 bits (356), Expect = 6e-36
 Identities = 74/112 (66%), Positives = 81/112 (72%)
 Frame = +3

Query: 6   RDTKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEVPQY 185
           +D K+SAKQPQ                           LNNQVLFDK TYEKLYKEVP Y
Sbjct: 5   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 64

Query: 186 KLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVIYTRATKGDD 341
           KLITP+VVSERLKIRGSLA+RAL+ELR+KGLIKQVVQHH QVIYTRATKGD+
Sbjct: 65  KLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  147 bits (356), Expect = 6e-36
 Identities = 74/112 (66%), Positives = 81/112 (72%)
 Frame = +3

Query: 6   RDTKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEVPQY 185
           +D K+SAKQPQ                           LNNQVLFDK TYEKLYKEVP Y
Sbjct: 5   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 64

Query: 186 KLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVIYTRATKGDD 341
           KLITP+VVSERLKIRGSLA+RAL+ELR+KGLIKQVVQHH QVIYTRATKGD+
Sbjct: 65  KLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =  144 bits (350), Expect = 3e-35
 Identities = 73/112 (65%), Positives = 80/112 (71%)
 Frame = +3

Query: 6   RDTKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEVPQY 185
           +D K+SAKQPQ                           LNNQVLFDK TYEKLYKEVP Y
Sbjct: 1   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 60

Query: 186 KLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVIYTRATKGDD 341
           KLITP+VVSERLKIRGSL +RAL+ELR+KGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  KLITPSVVSERLKIRGSLDKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 112


>X68259-1|CAA48327.1|  464|Drosophila melanogaster elg protein.
          Length = 464

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -1

Query: 214 SETTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 35
           +E T   ++ +   ++  F  VG++ + W  N        H  F    P DP   FW   
Sbjct: 203 NEWTHAHVTYWLEWAVKQFELVGINMSDWQMNGQELCAMTHEEFNQKLPRDPGNIFWTHL 262

Query: 34  GCLAEA-FVSLV 2
             L E  FVS+V
Sbjct: 263 QLLKECNFVSVV 274


>BT025224-1|ABF17915.1|  464|Drosophila melanogaster FI01018p
           protein.
          Length = 464

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -1

Query: 214 SETTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 35
           +E T   ++ +   ++  F  VG++ + W  N        H  F    P DP   FW   
Sbjct: 203 NEWTHAHVTYWLEWAVKQFELVGINMSDWQMNGQELCAMTHEEFNQKLPRDPGNIFWTHL 262

Query: 34  GCLAEA-FVSLV 2
             L E  FVS+V
Sbjct: 263 QLLKECNFVSVV 274


>AY070960-1|AAL48582.1|  394|Drosophila melanogaster RE06142p
           protein.
          Length = 394

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -1

Query: 214 SETTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 35
           +E T   ++ +   ++  F  VG++ + W  N        H  F    P DP   FW   
Sbjct: 203 NEWTHAHVTYWLEWAVKQFELVGINMSDWQMNGQELCAMTHEEFNQKLPRDPGNIFWTHL 262

Query: 34  GCLAEA-FVSLV 2
             L E  FVS+V
Sbjct: 263 QLLKECNFVSVV 274


>AE014297-4021|AAF56638.1|  464|Drosophila melanogaster CG6338-PA
           protein.
          Length = 464

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -1

Query: 214 SETTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 35
           +E T   ++ +   ++  F  VG++ + W  N        H  F    P DP   FW   
Sbjct: 203 NEWTHAHVTYWLEWAVKQFELVGINMSDWQMNGQELCAMTHEEFNQKLPRDPGNIFWTHL 262

Query: 34  GCLAEA-FVSLV 2
             L E  FVS+V
Sbjct: 263 QLLKECNFVSVV 274


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,361,711
Number of Sequences: 53049
Number of extensions: 270924
Number of successful extensions: 667
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)