Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I03
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 111 2e-25
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 29 1.7
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 29 1.7
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 29 1.7
Z99281-17|CAB54456.2| 177|Caenorhabditis elegans Hypothetical p... 27 6.9
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 27 6.9
AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine re... 27 6.9
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 26 9.1
AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical ... 26 9.1
AC006780-5|AAF60646.1| 287|Caenorhabditis elegans Hypothetical ... 26 9.1
AC006780-4|AAO21411.1| 312|Caenorhabditis elegans Hypothetical ... 26 9.1
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 111 bits (267), Expect = 2e-25
Identities = 53/76 (69%), Positives = 62/76 (81%)
Frame = +3
Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 299
LNN VLFD+ TY+KLYKEV YKLITP+VVSERLK+R SLA+ L EL+ KGL+K VV H
Sbjct: 40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99
Query: 300 HGQVIYTRATKGDDPV 347
HGQV+YTRATK D +
Sbjct: 100 HGQVVYTRATKEADVI 115
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -1
Query: 190 SLYCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFCGCLAEAFV 11
SL CG + Y+ LS TW+ L + H + P DP F ++ G + A +
Sbjct: 609 SLQCGIIAVALMYMFLSALTWM--LLEGYHI-HRMLTEVFPSDPRRFTYLLVGYIPPAII 665
Query: 10 SLV 2
+LV
Sbjct: 666 TLV 668
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
protein B0457.1a protein.
Length = 1014
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -1
Query: 190 SLYCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFCGCLAEAFV 11
SL CG + Y+ LS TW+ L + H + P DP F ++ G + A +
Sbjct: 611 SLQCGIIAVALMYMFLSALTWM--LLEGYHI-HRMLTEVFPSDPRRFTYLLVGYIPPAII 667
Query: 10 SLV 2
+LV
Sbjct: 668 TLV 670
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -1
Query: 190 SLYCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFCGCLAEAFV 11
SL CG + Y+ LS TW+ L + H + P DP F ++ G + A +
Sbjct: 609 SLQCGIIAVALMYMFLSALTWM--LLEGYHI-HRMLTEVFPSDPRRFTYLLVGYIPPAII 665
Query: 10 SLV 2
+LV
Sbjct: 666 TLV 668
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -1
Query: 190 SLYCGTSLYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFCGCLAEAFV 11
SL CG + Y+ LS TW+ L + H + P DP F ++ G + A +
Sbjct: 611 SLQCGIIAVALMYMFLSALTWM--LLEGYHI-HRMLTEVFPSDPRRFTYLLVGYIPPAII 667
Query: 10 SLV 2
+LV
Sbjct: 668 TLV 670
>Z99281-17|CAB54456.2| 177|Caenorhabditis elegans Hypothetical
protein Y57G11C.33 protein.
Length = 177
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 222 STFQRQQRV*SACTVVLPYTVSHMWVCQTTLGCLTCHGLFLLTTSS 85
+T R R+ + + P T+ +T LGC TC+ + +T S+
Sbjct: 73 NTIVRINRIFADAEAITPQTIF-----ETVLGCFTCYASYAITKST 113
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 126 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KIRGSL 239
N +LFD+ EKL++++ + + P V E+L ++R +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732
>AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine
receptor, class t protein6 protein.
Length = 355
Score = 26.6 bits (56), Expect = 6.9
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Frame = -1
Query: 232 PRIF-NLSETTAGVISLYCGTSLYSF-SY-----VGLSNNTWLFNLSRTFPFDHFFFLAL 74
P IF + ET + ++ + C +LY + SY +G S +TWL+ R F
Sbjct: 192 PDIFVSHPETVSNIVLVICTGTLYLYLSYNLLFKLGYSTSTWLYKTKRQIIFQAVILCVF 251
Query: 73 PPPDPSFF-FWVFC 35
+ F +FC
Sbjct: 252 HATVAGLYSFMMFC 265
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 219 LKIRGSLARRALVELRDKGLIKQVVQHHGQVIYTR 323
L ++GS+ + A +ELR+ + Q + H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225
>AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical
protein C52E2.4 protein.
Length = 658
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 166 YSFSYVGLSNNTWLFNLSRTFPFDHFFFLAL 74
Y+F +G++N + L LS F+HF L L
Sbjct: 3 YAFKLLGIANESTLTVLSLRLAFNHFVELRL 33
>AC006780-5|AAF60646.1| 287|Caenorhabditis elegans Hypothetical
protein Y47D9A.2a protein.
Length = 287
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 159 KLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 314
+L +P Y +I RL + +A + E D+ LI QVVQ H Q++
Sbjct: 235 RLRDHIPFYSIIHQQEGPGRLPLL-EVAPPPVTEPNDEQLITQVVQKHPQLV 285
>AC006780-4|AAO21411.1| 312|Caenorhabditis elegans Hypothetical
protein Y47D9A.2b protein.
Length = 312
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 159 KLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 314
+L +P Y +I RL + +A + E D+ LI QVVQ H Q++
Sbjct: 260 RLRDHIPFYSIIHQQEGPGRLPLL-EVAPPPVTEPNDEQLITQVVQKHPQLV 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,768,238
Number of Sequences: 27780
Number of extensions: 138595
Number of successful extensions: 487
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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