Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I02
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    56   1e-11
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    30   0.95 
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 56.0 bits (129), Expect(2) = 1e-11
 Identities = 39/100 (39%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +3

Query: 252 KNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 431
           K G  +    K   +  P   +  G       SK V   R  LTPGTV I+LAGRH GKR
Sbjct: 31  KKGEKKPKFTKDTSAKLPKLQR-NGTKFALGHSKTVT-LRKTLTPGTVLIVLAGRHKGKR 88

Query: 432 XXXXXXX-XXXXXXFTGPFAFNACPLRRIPQRYVIGTSTK 548
                          TGP   N  PLRRI Q +VI TS K
Sbjct: 89  VVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLK 128



 Score = 30.7 bits (66), Expect(2) = 1e-11
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 102 RNYDLGNGVLRFSKSRMYHKK 164
           RN+DL  GVLRFS SR+  KK
Sbjct: 12  RNFDLSPGVLRFSASRLRLKK 32


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +3

Query: 297 FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 431
           FYPT+   + RSHG   +       PN     V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 361 VGRDLTSL--PAQCAFCWR-ADTLASVSCSLECC 453
           V R+ T+L   ++C F W  A T A+ +CS  CC
Sbjct: 74  VNRNCTALVPDSKCVFKWAFATTAAATACSCTCC 107


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
           protein AC3.8 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 218 FLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFAN 90
           FL +F F  L  + L Y+ LVV P FG +       +    AN
Sbjct: 4   FLLVFLFFALYCNVLAYNYLVVAPVFGYSHMKFMNKVADTLAN 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,702
Number of Sequences: 27780
Number of extensions: 269108
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)