Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I02
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 75 2e-14
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 75 2e-14
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 72 2e-13
At5g60060.1 68418.m07531 F-box family protein various predicted ... 31 0.38
At5g44290.1 68418.m05421 protein kinase family protein contains ... 29 2.7
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 28 4.7
At4g14730.1 68417.m02265 transmembrane protein-related low simil... 28 4.7
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 27 6.2
At5g62910.1 68418.m07894 expressed protein predicted proteins, A... 27 8.3
At3g55160.1 68416.m06126 expressed protein 27 8.3
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 27 8.3
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 75.4 bits (177), Expect = 2e-14
Identities = 50/149 (33%), Positives = 70/149 (46%)
Frame = +3
Query: 102 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 281
RN DL GV ++S+S+MYHK+ ++ + V +
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58
Query: 282 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 461
+ FYP +D ++ + +K + R ++TPGTV I+LAGR GKR
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 462 XXXFTGPFAFNACPLRRIPQRYVIGTSTK 548
TGPF N PLRR+ Q YVIGTSTK
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTK 145
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 75.4 bits (177), Expect = 2e-14
Identities = 50/149 (33%), Positives = 70/149 (46%)
Frame = +3
Query: 102 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 281
RN DL GV ++S+S+MYHK+ ++ + V +
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58
Query: 282 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 461
+ FYP +D ++ + +K + R ++TPGTV I+LAGR GKR
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 462 XXXFTGPFAFNACPLRRIPQRYVIGTSTK 548
TGPF N PLRR+ Q YVIGTSTK
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTK 145
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 72.1 bits (169), Expect = 2e-13
Identities = 50/149 (33%), Positives = 68/149 (45%)
Frame = +3
Query: 102 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 281
RN DL GV ++S+S+MYHK+ ++ V + EK
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPV--EKPA------- 62
Query: 282 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 461
FYP +D + + + + + ++TPGTV I+LAGR GKR
Sbjct: 63 ----KFYPAEDVKKPLVNRRK--PKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
Query: 462 XXXFTGPFAFNACPLRRIPQRYVIGTSTK 548
TGPF N PLRR+ Q YVIGTSTK
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTK 145
>At5g60060.1 68418.m07531 F-box family protein various predicted
proteins, Arabidopsis thaliana ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 374
Score = 31.5 bits (68), Expect = 0.38
Identities = 25/95 (26%), Positives = 41/95 (43%)
Frame = +1
Query: 112 TSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK*AVKRMEALVQSC*KAG 291
+S+T++ + ++ C T RL + LS + R K P+ P W S + L QS
Sbjct: 30 SSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLKQS--NVY 87
Query: 292 NHSTPLRTRSGVVLMARVSVNMCVGRDLTSLPAQC 396
PL R+ +V + + + DL S C
Sbjct: 88 KLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRIC 122
>At5g44290.1 68418.m05421 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 644
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 508 RRGHALKAKGPVKSSRPLGNTPTSTTRLPACLPAN 404
RR H K PVK++ P +T L +C+P N
Sbjct: 468 RRSHERKLIPPVKANNPSLSTAVENPYLRSCVPGN 502
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 438 ARHACQRVCPPTECTLCRE 382
ARHAC+R C EC C E
Sbjct: 411 ARHACRRRCCDGECPPCSE 429
>At4g14730.1 68417.m02265 transmembrane protein-related low
similarity to transmembrane protein OTMP [Ovis aries]
GI:9965379
Length = 235
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -2
Query: 251 FTAYLLNHDGWFLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFANFLLLDT 72
F A HD FLG F F LL + L + HP + S + F +++ DT
Sbjct: 140 FWAVKRGHDFSFLGPFLFGALLIILVFTLLQIFHPLGKLSSMIFSGIASIVFCGYIIFDT 199
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 372 VSSYAHVY*NSCHENDP*SCPEWGRMI 292
+ +A V +SC+END SC W +I
Sbjct: 345 LKQFAQVLKSSCNENDTLSCTLWDSLI 371
>At5g62910.1 68418.m07894 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 327
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 LTSLPAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRVPC-AGFR 519
L +L Q +F +SV+ C +CY LDL S +PC GFR
Sbjct: 227 LPNLAKQLSFPELDKRFSSVAIPSSC--PICYEDLDLTDSNFLPCPCGFR 274
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +1
Query: 388 AQCAFCWR-----ADTLASVSCSLECCRVVC-YSSLDLLLSTR 498
AQC FCW AD ++ + + + C +C +SSL L R
Sbjct: 279 AQCIFCWSSVVRLADIVSKIPFAGDICSEICSFSSLSRLCLIR 321
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 70 AVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTR--KLKSPRNQPSWLS 237
AV R++ +RG ++S++ +A C T L ++L + R KL P +Q ++ S
Sbjct: 258 AVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTS 315
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,394,485
Number of Sequences: 28952
Number of extensions: 251774
Number of successful extensions: 639
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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