Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I01
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   213   9e-56
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    31   0.40 
Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  213 bits (519), Expect = 9e-56
 Identities = 95/131 (72%), Positives = 115/131 (87%)
 Frame = +3

Query: 45  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 224
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 225 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 404
           EE+ +KIVTIM NP QYKIP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR H
Sbjct: 61  EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120

Query: 405 RGMRHYWGLRV 437
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 429 DPSSDAYPYEHGSSSAFPNLHEAWSLNWKKSTGCICHQQYPFVC*E 292
           +P    +  EHG    F N  E +S N++    CIC Q++ F C E
Sbjct: 94  NPCPVGFTKEHGCLEEFENSAE-FSRNYQADQHCICDQEHMFNCAE 138


>Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.3 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 492 WTHQQFYLFCLWS*CVDHGHADPSSDAYPYEHGSSSAFPNLHEAWSLNWKK 340
           W H QF +    + CVD  + + + +A  ++ G SS   NL   W+   K+
Sbjct: 65  WGHGQFGMIITGNVCVDPINLEAAGNAIIFKEGESSKRRNLFSQWAQKIKQ 115


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 261 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 377
           NP  YK+ D++ N+  +++  K + +L S++L  K +++L
Sbjct: 40  NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +3

Query: 174 VLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 353
           VLK+  I L KR  +  E+E  K VT+                 K    G  +  T + L
Sbjct: 45  VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104

Query: 354 DSKLREDLERLKKIR 398
           D+  + + +  KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119


>AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical
           protein M01B12.4c protein.
          Length = 678

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +3

Query: 174 VLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 353
           VLK+  I L KR  +  E+E  K VT+                 K    G  +  T + L
Sbjct: 45  VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104

Query: 354 DSKLREDLERLKKIR 398
           D+  + + +  KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +3

Query: 174 VLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 353
           VLK+  I L KR  +  E+E  K VT+                 K    G  +  T + L
Sbjct: 45  VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104

Query: 354 DSKLREDLERLKKIR 398
           D+  + + +  KK+R
Sbjct: 105 DNLPKSEQQYDKKLR 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,866,866
Number of Sequences: 27780
Number of extensions: 212185
Number of successful extensions: 658
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)