Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I01
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)           211   2e-55
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi...   211   2e-55
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc...   211   2e-55
At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate transloca...    32   0.21 
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    28   3.5  
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ...    27   8.0  
At1g67850.2 68414.m07746 expressed protein contains Pfam profile...    27   8.0  
At1g67850.1 68414.m07745 expressed protein contains Pfam profile...    27   8.0  

>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
          Length = 152

 Score =  211 bits (516), Expect = 2e-55
 Identities = 91/131 (69%), Positives = 117/131 (89%)
 Frame = +3

Query: 45  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 224
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 225 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 404
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 405 RGMRHYWGLRV 437
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
           to ribosomal protein S18 GI:38422 from [Homo sapiens]
          Length = 152

 Score =  211 bits (516), Expect = 2e-55
 Identities = 91/131 (69%), Positives = 117/131 (89%)
 Frame = +3

Query: 45  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 224
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 225 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 404
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 405 RGMRHYWGLRV 437
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
           to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
           A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
           gb|R30430 come from this gene
          Length = 152

 Score =  211 bits (516), Expect = 2e-55
 Identities = 91/131 (69%), Positives = 117/131 (89%)
 Frame = +3

Query: 45  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 224
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 225 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 404
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 405 RGMRHYWGLRV 437
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate
           translocator-related similar to glucose 6
           phosphate/phosphate translocators from Pisum sativum]
           GI:2997591, [Mesembryanthemum crystallinum] GI:9295277,
           [Solanum tuberosum] GI:2997593; contains Pfam profile
           PF00892: Integral membrane protein
          Length = 341

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -1

Query: 322 PSTISFCLLRNQSGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTMLEYRRP-T 149
           PS  S  ++   SG+L +CL F +   I ST++   + A   +   A F + + +R P +
Sbjct: 226 PSPWSALIILFNSGVLAFCLNFSIFYVIQSTTAVTFNVAGNLKVAVAVFVSWMIFRNPIS 285

Query: 148 PLIAVIANITL 116
           P+ AV   ITL
Sbjct: 286 PMNAVGCGITL 296


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 321 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 416
           G YS +   NLD+     L+R+KK+ A  G R
Sbjct: 26  GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57


>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
           (CS13) ribosomal protein S13 precursor, chloroplast
           Arabidopsis thaliana, PIR:S59594; identical to cDNA
           ribosomal protein S13 GI:1515106
          Length = 169

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 375 LERLKKIRAHRGMRHYWGL 431
           ++RLK+I+ +RG+RH  GL
Sbjct: 122 IKRLKEIQCYRGVRHIQGL 140


>At1g67850.2 68414.m07746 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 404

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 426 PSSD-AYPYEHGSSSAFPNLHEAWS 355
           PS+D +Y  E GS  A P  H+AWS
Sbjct: 53  PSNDLSYIEEKGSKIATPESHKAWS 77


>At1g67850.1 68414.m07745 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 404

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 426 PSSD-AYPYEHGSSSAFPNLHEAWS 355
           PS+D +Y  E GS  A P  H+AWS
Sbjct: 53  PSNDLSYIEEKGSKIATPESHKAWS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,192,567
Number of Sequences: 28952
Number of extensions: 195511
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)