Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H24
(445 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 228 4e-59
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 227 6e-59
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 224 8e-58
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 185 3e-46
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 181 5e-45
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 177 1e-43
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 169 2e-41
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 155 5e-37
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 153 2e-36
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 135 5e-31
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 122 3e-27
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 120 2e-26
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 117 1e-25
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 113 1e-24
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 100 3e-20
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 79 3e-14
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 65 7e-10
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 64 1e-09
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 64 1e-09
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 64 1e-09
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 62 4e-09
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 61 9e-09
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 59 5e-08
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 58 6e-08
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 57 2e-07
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 54 1e-06
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 54 2e-06
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 52 4e-06
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 51 1e-05
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 50 2e-05
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 50 3e-05
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 48 9e-05
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 48 9e-05
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 47 2e-04
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 44 0.001
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 44 0.002
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 40 0.024
UniRef50_Q5DFQ5 Cluster: SJCHGC04650 protein; n=1; Schistosoma j... 36 0.30
UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;... 35 0.69
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 1.6
UniRef50_Q4RQ03 Cluster: Chromosome 17 SCAF15006, whole genome s... 33 2.1
UniRef50_A3ZUT1 Cluster: Probable S-layer related protein; n=2; ... 33 3.7
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 3.7
UniRef50_Q8YQA8 Cluster: Alr3925 protein; n=5; Nostocaceae|Rep: ... 32 6.4
UniRef50_A5N0X0 Cluster: Putative uncharacterized protein; n=1; ... 32 6.4
UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4; Actin... 32 6.4
UniRef50_UPI0001552B57 Cluster: PREDICTED: hypothetical protein;... 31 8.5
UniRef50_Q60BZ5 Cluster: Selenium-binding family protein; n=4; P... 31 8.5
UniRef50_A7TEH8 Cluster: Putative uncharacterized protein; n=1; ... 31 8.5
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 228 bits (558), Expect = 4e-59
Identities = 105/130 (80%), Positives = 116/130 (89%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 413
FPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120
Query: 414 IPGLTDGEVP 443
IPGLTD VP
Sbjct: 121 IPGLTDTTVP 130
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 227 bits (556), Expect = 6e-59
Identities = 102/129 (79%), Positives = 116/129 (89%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 413
FPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++
Sbjct: 61 FPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKD 120
Query: 414 IPGLTDGEV 440
IPGLTD V
Sbjct: 121 IPGLTDTTV 129
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 224 bits (547), Expect = 8e-58
Identities = 98/130 (75%), Positives = 112/130 (86%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 413
FPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+
Sbjct: 61 FPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQD 120
Query: 414 IPGLTDGEVP 443
IPGLTD +P
Sbjct: 121 IPGLTDNTIP 130
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 185 bits (451), Expect = 3e-46
Identities = 84/130 (64%), Positives = 102/130 (78%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MK N+SYP TG QK E+ D+ K IF++KRMG V+AD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 413
FPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA E
Sbjct: 61 FPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANE 120
Query: 414 IPGLTDGEVP 443
I GLTD VP
Sbjct: 121 IAGLTDQNVP 130
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 181 bits (441), Expect = 5e-45
Identities = 85/116 (73%), Positives = 99/116 (85%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 401
FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 115
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 177 bits (430), Expect = 1e-43
Identities = 81/130 (62%), Positives = 98/130 (75%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MK N+SYP TG QK E+ D+ K IF +K+MG EV+ D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 413
FPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG E
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 414 IPGLTDGEVP 443
I GLT +P
Sbjct: 121 IDGLTTVTLP 130
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 169 bits (411), Expect = 2e-41
Identities = 81/132 (61%), Positives = 95/132 (71%)
Frame = +3
Query: 45 IAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGND 224
I MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGND
Sbjct: 39 IQKMKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGND 98
Query: 225 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 404
KQGFPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG
Sbjct: 99 KQGFPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKG 158
Query: 405 AQEIPGLTDGEV 440
EIPGLTD V
Sbjct: 159 TNEIPGLTDKAV 170
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 155 bits (375), Expect = 5e-37
Identities = 67/130 (51%), Positives = 94/130 (72%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
M++ ++YP G Q + ++ D L YEKR+G +++ + LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 413
FPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +E
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKE 120
Query: 414 IPGLTDGEVP 443
I GLT VP
Sbjct: 121 IDGLTTTAVP 130
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 153 bits (370), Expect = 2e-36
Identities = 70/129 (54%), Positives = 95/129 (73%)
Frame = +3
Query: 57 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGF 236
K+NV+YPATG K F+ +E R F +KR+G EVDA LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 237 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 416
PM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEI 120
Query: 417 PGLTDGEVP 443
G+T+ +P
Sbjct: 121 EGVTNDALP 129
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 135 bits (326), Expect = 5e-31
Identities = 64/129 (49%), Positives = 84/129 (65%)
Frame = +3
Query: 57 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGF 236
K+N+S P TG K + D K + + RM +E D LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 237 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 416
PM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V G + +
Sbjct: 68 PMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTL 127
Query: 417 PGLTDGEVP 443
PGLTD VP
Sbjct: 128 PGLTDVVVP 136
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 122 bits (295), Expect = 3e-27
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 234 FPMKQGVLTNSRVRLLM 284
FPMKQ VLT+ R+ LL+
Sbjct: 61 FPMKQDVLTHDRIHLLL 77
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 120 bits (288), Expect = 2e-26
Identities = 59/133 (44%), Positives = 87/133 (65%), Gaps = 3/133 (2%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQ 230
MKLN++YP G K FE+ DE R+ + R+G EVD + G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 231 GFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIVRKG 404
GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++++ + I + G
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVG 120
Query: 405 AQEIPGLTDGEVP 443
Q I G+TD P
Sbjct: 121 DQPIEGVTDTTAP 133
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 117 bits (281), Expect = 1e-25
Identities = 54/116 (46%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MK N++ P+TG Q E+ DE KLRI Y K++ +++D ++G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIV 395
FPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL + ++
Sbjct: 61 FPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLL 116
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 113 bits (273), Expect = 1e-24
Identities = 54/112 (48%), Positives = 80/112 (71%)
Frame = +3
Query: 96 LFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 275
+FE+ +++R+ Y+K++G + D +LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 276 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTD 431
L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTN 111
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 99.5 bits (237), Expect = 3e-20
Identities = 50/80 (62%), Positives = 57/80 (71%)
Frame = +3
Query: 204 RVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLA 383
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLA
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLA 115
Query: 384 LVIVRKGAQEIPGLTDGEVP 443
L +V+KGA EI GLTD VP
Sbjct: 116 LQVVKKGANEIAGLTDQNVP 135
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.4 bits (187), Expect = 3e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWK 191
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 64.9 bits (151), Expect = 7e-10
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 9/111 (8%)
Frame = +3
Query: 45 IAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDA--------DLLGDEWKGYV 200
+A KL +S P +G K E+ ++ KR+G ++ A +L G E+ V
Sbjct: 1 MATFKLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDV 59
Query: 201 -LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 350
L + GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 60 KLEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 64.1 bits (149), Expect = 1e-09
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Frame = +3
Query: 93 KLFEV-VDEHKLRIFYEKRMGAEVDADLLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 266
K F++ ++ R F KR+G V A +LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 267 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 401
+ R L+S G + PR GER+RK+VRG + ++ + IV++
Sbjct: 193 KKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ 236
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 64.1 bits (149), Expect = 1e-09
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Frame = +3
Query: 45 IAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDA--------DLLGDEWKGYV 200
+A KL +S P G K E+ ++ +R+G E+ A ++ G+E
Sbjct: 1 MATFKLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADA 59
Query: 201 -LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSV 377
L++ GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+
Sbjct: 60 KLKITGGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQ 118
Query: 378 LALVIV 395
+ + IV
Sbjct: 119 VNMKIV 124
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 64.1 bits (149), Expect = 1e-09
Identities = 33/91 (36%), Positives = 57/91 (62%)
Frame = +3
Query: 144 RMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 323
++G E + +LG KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKG 86
Query: 324 ERKRKSVRGCIVDANLSVLALVIVRKGAQEI 416
R+RK+VRG + ++S + + + +G Q +
Sbjct: 87 LRRRKTVRGNTIADDISQINVKVSERGEQTL 117
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 62.5 bits (145), Expect = 4e-09
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +3
Query: 66 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFP 239
+S P TG QK+ E + ++L K++G + ++ D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIGDVISGTIV-DLPPDYELKITGGTDRDGFP 62
Query: 240 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 404
M+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 63 MRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 61.3 bits (142), Expect = 9e-09
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Frame = +3
Query: 45 IAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGND 224
+A ++ V+ P +G FEV D F + +GA VD +G + GY + + GG+D
Sbjct: 1 MATFQVAVADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSD 57
Query: 225 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 404
G PM++ V + + +L+ +G + + P DGERKR +VRG V ++ L + I G
Sbjct: 58 DAGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHG 116
Query: 405 AQEIPGL--TDGE 437
+ + L DG+
Sbjct: 117 EEPVAELLGADGD 129
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 58.8 bits (136), Expect = 5e-08
Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 57 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGF 236
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 237 PMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 413
MKQ VL + RV LL++ HS Y+P R E S++ V +S+L +VI+ G ++
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKD 109
Query: 414 IPGLTDGEVP 443
IPG T P
Sbjct: 110 IPGQTKRWAP 119
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 58.4 bits (135), Expect = 6e-08
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MK+N++ P G Q + DE I K +G ++ +LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 407
F +K+ + T R+++ + KG R +R K+++VRG I+ + +S + LV +
Sbjct: 60 FLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSINLVKLPNNV 119
Query: 408 QE 413
+E
Sbjct: 120 KE 121
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 56.8 bits (131), Expect = 2e-07
Identities = 27/94 (28%), Positives = 56/94 (59%)
Frame = +3
Query: 141 KRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 320
K++G E+ ++ E +GY L++ GG+D+ GF M+ + ++R+L+ +G Y +
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEK 84
Query: 321 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 422
G R+RKS+RG + +++++ +V G+ + G
Sbjct: 85 GLRRRKSLRGNTISKDITLINTKVVEYGSAPLGG 118
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 54.0 bits (124), Expect = 1e-06
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = -3
Query: 440 NFTVSQSRNFLCTFADNDQG*D*KVSINNATTNRLAFPLTVTTWSVARVA--F*HQETYT 267
+F + ++R+ DNDQ V ++ATT RLA T+ + A A H++ +T
Sbjct: 123 HFGIGEARDVGVALLDNDQVQHGNVLGDDATTARLASAFTLASAVAAEAARALGHEQEHT 182
Query: 266 AVSQDSLFHREALLVVTAGNTENITFPFV 180
V Q +L H EALLVVT + E+++ PF+
Sbjct: 183 LVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 53.6 bits (123), Expect = 2e-06
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +3
Query: 144 RMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 323
++G D L+G GY L + GG+D GFPM + + R+L+S G + PR G
Sbjct: 132 KIGDTFDGGLVG--LPGYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKG 188
Query: 324 ERKRKSVRGCIVDANLSVLALVIV 395
ER+RK+VRG + ++ + VIV
Sbjct: 189 ERRRKTVRGNTITHDIVQINTVIV 212
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 52.4 bits (120), Expect = 4e-06
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +3
Query: 108 VDEHKLRIFYEKRMGAEVDAD-LLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 284
VD++K ++G +A+ L+G K L++ GG+D GFPM+ V+ ++ ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 285 SKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 398
S G + P +GER+RK++RG + + + +IVR
Sbjct: 178 S-GPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 51.2 bits (117), Expect = 1e-05
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Frame = +3
Query: 57 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEW---KGYVLRVAGGNDK 227
KL +S P +G + FE+ D R F ++G E+D +L D KG +R+ GG+
Sbjct: 5 KLVLSDPMSGKARQFEIKDPLAQR-FIGLKIGDELDGVILKDLIELPKGAKIRITGGSGI 63
Query: 228 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDANLSVLALVIVRKG 404
+G PM GV + + +++ G Y P + G +K+K VRG I D+ + + A+++ K
Sbjct: 64 EGAPMHPGVPGPVK-KYILADGPPGYWPPKKGMKKKKLVRGNTISDSIVQINAVIVYPKD 122
Query: 405 AQEIPGLTDG 434
P + G
Sbjct: 123 YTGPPAIPLG 132
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 50.4 bits (115), Expect = 2e-05
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = +3
Query: 141 KRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 320
K++G EVDA LG GY + + GG+D+ G P ++ + R +LL+++G + P +
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVME 88
Query: 321 GERKRKSVR 347
GERKRK +R
Sbjct: 89 GERKRKMIR 97
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 49.6 bits (113), Expect = 3e-05
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +3
Query: 147 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 326
+G D L+G G ++ GG D G PM GV + R ++L++ G + PR GE
Sbjct: 142 IGDVFDGGLIG--MPGLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGE 198
Query: 327 RKRKSVRGCIV 359
R+RKSVRG ++
Sbjct: 199 RRRKSVRGRMI 209
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 48.0 bits (109), Expect = 9e-05
Identities = 34/124 (27%), Positives = 64/124 (51%)
Frame = +3
Query: 66 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMK 245
++ P TG E+ E ++ +++G EVD + GY +++ GG+ GF M+
Sbjct: 8 IADPKTGKTYKREIPSE-RMSSLIGRKIGEEVDGVFF--DLVGYKMKITGGSSVDGFAMR 64
Query: 246 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGL 425
+ T + ++L+ K S YR ++G RKR + RG I+ ++++ + L I + G I
Sbjct: 65 PDLQTQGKKQILV-KYTSGYR-GKNGIRKRITARGSIIGSDITQINLKITQYGPTPIEEK 122
Query: 426 TDGE 437
D +
Sbjct: 123 KDDQ 126
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 48.0 bits (109), Expect = 9e-05
Identities = 30/95 (31%), Positives = 49/95 (51%)
Frame = +3
Query: 141 KRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 320
K +G VD + G GY +++ GG D GF MK + R R+L + G Y P+
Sbjct: 32 KSIGDVVDGSIFG--LAGYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLP 88
Query: 321 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGL 425
G+R+RK +RG + ++ + +V G++ I L
Sbjct: 89 GQRRRKMMRGKEIAPDIVQVNAKVVEYGSKSIKAL 123
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 46.8 bits (106), Expect = 2e-04
Identities = 29/68 (42%), Positives = 39/68 (57%)
Frame = +3
Query: 147 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 326
+G+E DA LG E K +R+ GG+DK G PM+ V +R +L+S+G R G
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGG 94
Query: 327 RKRKSVRG 350
R RK VRG
Sbjct: 95 RTRKLVRG 102
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 44.4 bits (100), Expect = 0.001
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +3
Query: 267 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 401
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 62
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 43.6 bits (98), Expect = 0.002
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +3
Query: 147 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 326
+G E DA ++G K L++ GG+DK G PM+ + +R +L+SKG + G+
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQ 88
Query: 327 RKRKSVRGCIVDANL 371
R RK +RG V +
Sbjct: 89 RVRKLMRGNTVSEEI 103
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 39.9 bits (89), Expect = 0.024
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +3
Query: 48 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDK 227
+V+K+ VS P +G E + L Y K++G +D +G + GY L++ GG+D
Sbjct: 5 SVVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDI 59
Query: 228 QGFPMKQGV 254
GFPM++ V
Sbjct: 60 AGFPMRKEV 68
>UniRef50_Q5DFQ5 Cluster: SJCHGC04650 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC04650 protein - Schistosoma
japonicum (Blood fluke)
Length = 219
Score = 36.3 bits (80), Expect = 0.30
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 216 RRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPL 79
R++ GE ++ + LEDLH+L + RR+G P L + PL
Sbjct: 154 RKRPGEEDILLNYLEDLHKLHEAWLIERRFGPLPAPVLVFDCNAPL 199
>UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;
n=1; Haemophilus ducreyi|Rep: Possible uroporphyrinogen
III synthase - Haemophilus ducreyi
Length = 251
Score = 35.1 bits (77), Expect = 0.69
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLL 176
M + ++YPA+ QKL ++ +H++ Y+ E+ ADLL
Sbjct: 1 MNVLITYPASRAQKLVDMCQQHRIFAIYQPIFSVELGADLL 41
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 33.9 bits (74), Expect = 1.6
Identities = 13/61 (21%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 237 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 413
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 414 I 416
+
Sbjct: 465 L 465
>UniRef50_Q4RQ03 Cluster: Chromosome 17 SCAF15006, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 17 SCAF15006, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1364
Score = 33.5 bits (73), Expect = 2.1
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -2
Query: 402 LCGQ*PGLRLKG*HQQCNHEQTCVSS--HRHDVVCSK--SGLLTSRDVHGC*SGLPVS*G 235
LCG P L G HQ C + TC+++ ++ C++ SG R H C SG P S G
Sbjct: 363 LCGTLPDLNYCGTHQPCLNGGTCINTGPDKYQCTCAEGYSGANCERAEHACLSG-PCSNG 421
>UniRef50_A3ZUT1 Cluster: Probable S-layer related protein; n=2;
Planctomycetaceae|Rep: Probable S-layer related protein
- Blastopirellula marina DSM 3645
Length = 749
Score = 32.7 bits (71), Expect = 3.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 18 EFGTRSKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGD 182
E G K L+ V+ + +Y + + +VDE +Y +RM AEV D + D
Sbjct: 541 ESGYDLKALVRVITQSKAYQLSALPNEYNLVDEQNYSRYYPRRMQAEVMLDAVND 595
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 32.7 bits (71), Expect = 3.7
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 57 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
KL+ SY A L EV D+ K RI+YE A + GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEHPNVASIK---FGDITKTYVVLVEGHYDNTG 497
Query: 234 FPMKQGVL 257
+K V+
Sbjct: 498 KNLKTQVI 505
>UniRef50_Q8YQA8 Cluster: Alr3925 protein; n=5; Nostocaceae|Rep:
Alr3925 protein - Anabaena sp. (strain PCC 7120)
Length = 987
Score = 31.9 bits (69), Expect = 6.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 219 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSD 88
Y G+H+L+ E+ HQ+Q+ Y H+RYG P L++ D
Sbjct: 758 YEHLSGKHSLTD---EERHQIQK-YNLHQRYGILVTPSLKLRDD 797
>UniRef50_A5N0X0 Cluster: Putative uncharacterized protein; n=1;
Clostridium kluyveri DSM 555|Rep: Putative
uncharacterized protein - Clostridium kluyveri DSM 555
Length = 860
Score = 31.9 bits (69), Expect = 6.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 93 KLFEVVDEHKLRIFYEKRMGAEVDADLLGDE-WKGY 197
KL E ++HK IF +R+ E + LLGDE WK Y
Sbjct: 747 KLIEDDNQHKYTIFLSRRIEDEKNNVLLGDEIWKEY 782
>UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4;
Actinomycetales|Rep: ATP-dependent helicase HrpA -
Nocardioides sp. (strain BAA-499 / JS614)
Length = 1282
Score = 31.9 bits (69), Expect = 6.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 105 VVDEHKLRIFYEKRMGAEVDADLLGDEW 188
VVDEH L FY+ R+GA+V + D+W
Sbjct: 774 VVDEHTLFDFYDARVGADVVSGAHFDQW 801
>UniRef50_UPI0001552B57 Cluster: PREDICTED: hypothetical protein;
n=2; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 215
Score = 31.5 bits (68), Expect = 8.5
Identities = 20/60 (33%), Positives = 24/60 (40%)
Frame = +3
Query: 150 GAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGER 329
GAE+ GDE G LR G +QG+ R R + HS R R G R
Sbjct: 44 GAEIPPAGAGDEPGGSTLRPCAGTRRQGYVTNARAPPRPRRRCFRAVRHSISRETRPGAR 103
>UniRef50_Q60BZ5 Cluster: Selenium-binding family protein; n=4;
Proteobacteria|Rep: Selenium-binding family protein -
Methylococcus capsulatus
Length = 459
Score = 31.5 bits (68), Expect = 8.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 84 GCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKG----YVLRVAGGNDKQG 233
G +LF++ D H R YEK +GA+V +++ W G Y + DK+G
Sbjct: 348 GKTRLFDISDPHHPRQVYEKTIGAQV--NMVSSSWDGQRLYYTSSLLANWDKKG 399
>UniRef50_A7TEH8 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 541
Score = 31.5 bits (68), Expect = 8.5
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 87 CQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 266
C+ L+E E I R+ + + L G W G + + G +QG +K+ ++ N
Sbjct: 451 CELLYECSCEEIEEICTIARLNGSIGSRLTGAGWGGSTIHMVPGGIEQGERVKEALINNY 510
Query: 267 RVR 275
+R
Sbjct: 511 YIR 513
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,625,226
Number of Sequences: 1657284
Number of extensions: 8763788
Number of successful extensions: 20965
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 20485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20942
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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