Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H24
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   177   4e-45
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   174   2e-44
11_04_0329 - 16442298-16443734                                         29   2.2  
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    29   2.2  
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192...    27   9.0  
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545...    27   9.0  
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322...    27   9.0  
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773...    27   9.0  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    27   9.0  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  177 bits (430), Expect = 4e-45
 Identities = 82/132 (62%), Positives = 102/132 (77%), Gaps = 2/132 (1%)
 Frame = +3

Query: 54  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 407
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 408 QEIPGLTDGEVP 443
            ++PGLTD E P
Sbjct: 121 NDLPGLTDTEKP 132


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  174 bits (424), Expect = 2e-44
 Identities = 81/132 (61%), Positives = 101/132 (76%), Gaps = 2/132 (1%)
 Frame = +3

Query: 54  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 407
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 408 QEIPGLTDGEVP 443
            ++PGLTD E P
Sbjct: 121 NDLPGLTDTEKP 132


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 415 ISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 308
           + CAP   M       LAS+  P + LRF S  RRG
Sbjct: 77  LPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 143 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSL 36
           LF++ T  V +  F  L   RC V + +LH C Q+L
Sbjct: 76  LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNL 111


>10_01_0171 +
           1917520-1918056,1919201-1919336,1921873-1922060,
           1922491-1922694,1923913-1924425
          Length = 525

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 198 VLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 302
           VLR+  GND     ++ G + NS + ++ +  H C
Sbjct: 301 VLRIENGNDGSMITIQHGQVINSGIWIIKTPFHIC 335


>09_06_0032 +
           20353789-20353963,20354240-20354340,20354426-20354560,
           20354633-20354714,20354829-20354896,20354984-20355073,
           20355133-20355257,20355384-20355717,20355841-20355957,
           20356058-20356485,20356564-20356813,20356944-20357194,
           20357278-20357587
          Length = 821

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 168 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 335
           DL G E +      AG   K+G  + + +LT  +V   +SKG + + P RD +  R
Sbjct: 221 DLAGSE-RASQTASAGMRLKEGSHINRSLLTLGKVIRQLSKGRNGHIPYRDSKLTR 275


>08_02_1482 -
           27428208-27428514,27428605-27428906,27431176-27432228,
           27432305-27432421,27432510-27432843,27433064-27433188,
           27433408-27433475,27433555-27433636,27433753-27433866,
           27433942-27434042,27434145-27434234,27434615-27434819
          Length = 965

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 168 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 335
           DL G E +      AG   K+G  + + +LT  +V   +SKG + + P RD +  R
Sbjct: 224 DLAGSE-RASQTASAGVRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR 278


>02_05_0492 -
           29476883-29476949,29477030-29477166,29477292-29477383,
           29477490-29477587,29477677-29477804,29477883-29478026,
           29478108-29478397,29478553-29478739,29479085-29479210,
           29480488-29480538,29480952-29481002,29482639-29484054
          Length = 928

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 117 AHPPLQITSDIPLPGMKRSTS*LRSVPSTSCR 22
           A  PL+   ++P+ GM R T  L S+ S  CR
Sbjct: 155 ASSPLRAFVELPMYGMDRDTPALNSLLSALCR 186


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 90  QKLF-EVVDEHKLRIFYEKR 146
           +KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,221
Number of Sequences: 37544
Number of extensions: 267497
Number of successful extensions: 691
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)