Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H24
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 298 EWPFDIKRRTRLLVRTPCFI 239
           EWP  +++R  L +   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 298 EWPFDIKRRTRLLVRTPCFI 239
           EWP  +++R  L +   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 8   ASCRIRHEVEGTD 46
           ++CR RHE+  TD
Sbjct: 520 SACRPRHEIRSTD 532


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 289 FDIKRRTRLLVR--TPCFIGKPCLSLPP 212
           + +KR  R ++   +  ++G  C+SLPP
Sbjct: 149 YGVKRTPRRMIVYVSLVWLGAACISLPP 176


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 219 YRRQHGEHNLSIRRLEDLHQLQRPYAFH 136
           Y RQH ++    + +E + + +R    H
Sbjct: 55  YHRQHSKNEQQRKEMEQMREREREQREH 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,880
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)