Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H24
(445 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 174 2e-44
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 173 3e-44
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi... 29 1.9
At5g65780.1 68418.m08277 branched-chain amino acid aminotransfer... 28 2.5
At4g24170.1 68417.m03468 kinesin motor family protein contains P... 28 3.3
At5g07820.1 68418.m00896 expressed protein 27 4.3
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 27 4.3
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH... 27 5.7
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 27 5.7
At4g14160.3 68417.m02185 transport protein, putative similar to ... 27 7.5
At4g14160.2 68417.m02186 transport protein, putative similar to ... 27 7.5
At4g14160.1 68417.m02184 transport protein, putative similar to ... 27 7.5
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 174 bits (424), Expect = 2e-44
Identities = 83/132 (62%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 407
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
Query: 408 QEIPGLTDGEVP 443
++PGLTD E P
Sbjct: 121 NDLPGLTDTEKP 132
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 173 bits (422), Expect = 3e-44
Identities = 82/132 (62%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
Frame = +3
Query: 54 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 233
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 234 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 407
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120
Query: 408 QEIPGLTDGEVP 443
++PGLTD E P
Sbjct: 121 SDLPGLTDTEKP 132
>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1155
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/94 (22%), Positives = 43/94 (45%)
Frame = +3
Query: 93 KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 272
K E +++R+ +R AE+ +LLG + K LR G D+ + Q + +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654
Query: 273 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 374
+ + G + Y D ++ +K D+ L+
Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684
>At5g65780.1 68418.m08277 branched-chain amino acid aminotransferase
5 / branched-chain amino acid transaminase 5 (BCAT5)
nearly identical to SP|Q9FYA6 Branched-chain amino acid
aminotransferase 5, chloroplast precursor (EC 2.6.1.42)
(Atbcat-5) {Arabidopsis thaliana}; contains Pfam
profile: PF01063 aminotransferase class IV
Length = 415
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 141 FHRRYGACAHPPLQITSDIPLPGMKRSTS*LRSVPSTSCRIRH 13
FHR Y CA T+ + S S LR+ PS+S RIRH
Sbjct: 10 FHRNYILCASRAATSTTRL------HSLSSLRNFPSSSLRIRH 46
>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1004
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 168 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 335
DL G E L AG K+G + + +LT V +SKG + + P RD + R
Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 445 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 335
+ TSPSVSP + + K R++ P+ DL
Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 90 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 185
+KL+ EV DE KLR+ YE++ D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
(CHX20) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 842
Score = 27.1 bits (57), Expect = 5.7
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -2
Query: 219 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 46
Y+ G H R+L+DL Q R AC H P ++S I L R+T LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 75 PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 242
P CQ + V D + FYEK G E+ E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 377 LSPGHCPQRCTG 412
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 377 LSPGHCPQRCTG 412
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 377 LSPGHCPQRCTG 412
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,787,096
Number of Sequences: 28952
Number of extensions: 197704
Number of successful extensions: 446
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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