Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H23
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,783... 32 0.36
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 29 2.5
04_04_0966 + 29776340-29776433,29776581-29776682,29777038-297771... 28 4.4
09_03_0170 - 13035371-13036504 28 5.9
03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446... 28 5.9
01_06_1132 - 34769800-34769955,34770098-34770157,34770259-347703... 28 5.9
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 27 7.7
>05_03_0052 +
7827973-7828031,7829012-7829139,7829243-7829305,
7830323-7830444,7830557-7830672,7830760-7831567,
7831800-7832528,7832638-7832859,7833089-7833184,
7833273-7833467,7834303-7834416,7835368-7835651,
7836216-7836293,7836326-7836449,7836739-7836786
Length = 1061
Score = 31.9 bits (69), Expect = 0.36
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 380 LSSMKAIAFLDSGFSDTINSWVLPNGA-VTAVSFQVNNSSQPLVHNANGYKL---NSIFY 547
LS K + L SG S + +W LP+G + + QV+ SS+PL+H + K+ N +F
Sbjct: 79 LSLGKYVVTLSSGGS-ILRAWNLPDGQMIWETNLQVSKSSKPLLHVLSNNKVAKDNLVFV 137
Query: 548 L 550
L
Sbjct: 138 L 138
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -1
Query: 300 FNSSICCFENC---IWSMIDVPALILFSEML 217
F S+C FE+C IWS D A I + M+
Sbjct: 262 FEDSVCLFESCFSQIWSSYDSSATICYENMV 292
>04_04_0966 +
29776340-29776433,29776581-29776682,29777038-29777154,
29777428-29777621,29777702-29777807,29777908-29778055,
29778201-29778337,29778436-29778602,29778681-29778974
Length = 452
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 281 QHIEELKRLAEVDGFYTLKSTVTSTENNKGTEFLSSMKAIAF 406
+++EELKRLA +G VTS ++ E LS+ + +
Sbjct: 311 EYLEELKRLAASEGVSEHVKFVTSCSTSERNELLSNCLCVLY 352
>09_03_0170 - 13035371-13036504
Length = 377
Score = 27.9 bits (59), Expect = 5.9
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Frame = +2
Query: 161 NIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQHIEELKRLAEVDGFYTLKS 340
N +++ TL G K C LK +S+ D S +E L + Y L +
Sbjct: 83 NFEVDDTLKVPGAKICCSTGRHLKMRVDKSSVFDIDLVSGVLVEVLPQKP-----YALFN 137
Query: 341 TVTSTENNK--GTEFLSSMKAIAFLDSGFSDTINSWVLPNGAVTAVSFQVNNSSQPLVHN 514
V S + + G E + +++ + + + SD W L + Q + + P++HN
Sbjct: 138 FVVSDRDERLFGIEAMFTIEVASAIRTN-SDEWEDWNLAENSPDWSQLQASPGTNPVLHN 196
Query: 515 ANGYKL 532
+ Y L
Sbjct: 197 SLLYLL 202
>03_02_0677 +
10343089-10343604,10344316-10344462,10344539-10344643,
10345411-10345509,10345662-10345814
Length = 339
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 137 SIDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQHIEEL-KRLAE 313
++D D +++ + C E H+G + +K S + F+ +HIE L ++ AE
Sbjct: 253 TLDKDQGISVLTDAIKACTAEIEKHKGKLIVKEAPRAVSEREDKLFN-EHIETLNEQNAE 311
Query: 314 VDG 322
VDG
Sbjct: 312 VDG 314
>01_06_1132 -
34769800-34769955,34770098-34770157,34770259-34770334,
34770412-34770533,34770634-34770708,34770899-34771025,
34771126-34771214,34773479-34773535,34773584-34773661
Length = 279
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 104 ICISGLFHNSVSIDYDSWLN 163
+ IS LFH+++ ID +SWL+
Sbjct: 93 VVISDLFHSNIIIDRNSWLS 112
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 215 GSISLKSMR-AGTSIIDQIQFSKQHIEE--LKRLAEVDGFYTLKSTVTSTENNK 367
GS S++ R A S+ D + IE + R AE+DGF++ K T T ++
Sbjct: 1042 GSASIRESRDAERSVADSDKVDDASIESRNVDRDAEIDGFFSSKLVETGTARSE 1095
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,824,357
Number of Sequences: 37544
Number of extensions: 236919
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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