Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H23
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46871| Best HMM Match : PAN (HMM E-Value=1)                         30   1.5  
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)                29   2.6  
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)                    29   3.4  
SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_39693| Best HMM Match : His_kinase (HMM E-Value=7)                  28   4.5  
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
          Length = 525

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 98  IFICISGLFHNSVSIDYDSWL-NIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQF 274
           + + ISG   ++ ++   S L N  I+ T  C  EK+CH  ++ L   ++G  + + I  
Sbjct: 46  LLVPISGANTSNETVTQKSLLANDIIDCTFECLAEKWCHSLNVKLTLTKSGQHVCELIVT 105

Query: 275 SKQHIEE 295
            K +  E
Sbjct: 106 DKYNHSE 112


>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
          Length = 1669

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/88 (23%), Positives = 33/88 (37%)
 Frame = +2

Query: 104 ICISGLFHNSVSIDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQ 283
           I + G  H  +S D++S  N K+E +    G K   +  I         S   +      
Sbjct: 422 IVLEGTRHKDMSTDFESSHNTKVEKS-QLEGGKKGRKSGIKKSKSEVNESNTSRKSIRGN 480

Query: 284 HIEELKRLAEVDGFYTLKSTVTSTENNK 367
             + +  ++E D       T  ST NNK
Sbjct: 481 KSQNVSAVSETDTTEPETRTRRSTRNNK 508


>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
          Length = 1123

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 163 IKPTIVVDTDRIMK*TTNTYKNRNISMH 80
           ++PTIV+DT R      NTY+ R++S +
Sbjct: 904 LQPTIVLDTARAFYPLNNTYQARDVSRY 931


>SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 383 SSMKAIAFLDSGFSDTINSWVLPNGAVTAVSFQVNNSSQPLVHNANGYKLNSIFYL 550
           S  K   F+DSGF DT+ SWV   G+   +   +  S+  +  +    KL +I+ L
Sbjct: 517 SGFKVTFFMDSGFRDTL-SWVEKEGSWMVL---ILISTSGIARHVQAQKLETIYDL 568


>SB_39693| Best HMM Match : His_kinase (HMM E-Value=7)
          Length = 272

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +2

Query: 125 HNSVSIDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQH 286
           H   + D + W+ I I H L+  G+K   R     +S++  +S++  +     H
Sbjct: 105 HFQTTFDKERWMFILIAHRLSKRGKKKVERFGRLTRSLKRCSSVVSSLTLPLIH 158


>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1798

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 239  RAGTSIIDQIQFSKQHIEELKRLAEVDGFYTLKSTVTSTENNK 367
            RA  S +  + FSK+  E    +AE DG  TL   +  T  ++
Sbjct: 1098 RAAASCLRNVSFSKERDENKLAIAECDGIETLLRLLQRTPKDE 1140


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 32  IKNIFFQVKSTNCVLKMHRYISIFICISGLFHNSVSIDYDSWLNIKIEHTLNCNGEK 202
           IK I +  KST    K+ R + +   IS L H +V   Y+SW+ +  E  ++ N ++
Sbjct: 612 IKRIPWNPKSTALNRKITREVQL---ISRLNHENVVRYYNSWIEMADEEDVSSNSDE 665


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,956
Number of Sequences: 59808
Number of extensions: 296962
Number of successful extensions: 545
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)