Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H23
(561 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT015204-1|AAT94433.1| 249|Drosophila melanogaster RE66462p pro... 77 2e-14
AE014296-3582|AAN12182.1| 211|Drosophila melanogaster CG32441-P... 77 2e-14
AE014296-3581|AAN12181.1| 198|Drosophila melanogaster CG32441-P... 75 7e-14
AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-P... 31 1.1
AE014297-1582|AAF54862.1| 512|Drosophila melanogaster CG5999-PA... 29 4.3
Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subuni... 28 9.9
AE014298-846|AAF46127.2| 2893|Drosophila melanogaster CG15899-PB... 28 9.9
AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-P... 28 9.9
>BT015204-1|AAT94433.1| 249|Drosophila melanogaster RE66462p
protein.
Length = 249
Score = 77.0 bits (181), Expect = 2e-14
Identities = 38/127 (29%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Frame = +2
Query: 98 IFICISGLFHNSVS-IDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQF 274
+ I + GL +S +++DSW+ ++++H+L N E + RG++++ S+ +G + ++Q
Sbjct: 30 VLIFVLGLVSSSWGFLEHDSWITVELQHSLAANSESFSFRGNVTIPSLNSGLANVEQPDL 89
Query: 275 SKQHIEELKRLAEVDGFYTLKSTVTSTENNKGTEFLSSMKAIAFLDSGFSDTINSWVLPN 454
S ++ LK+LA + FY LK+TV + N +F++S KA L + +D + + P+
Sbjct: 90 STADLDLLKKLALGNEFYRLKATVVYS-NGAKAQFITSNKACRLLQAQLNDVLWVSLEPS 148
Query: 455 GAVTAVS 475
G VT ++
Sbjct: 149 GYVTGIT 155
>AE014296-3582|AAN12182.1| 211|Drosophila melanogaster CG32441-PA,
isoform A protein.
Length = 211
Score = 77.0 bits (181), Expect = 2e-14
Identities = 38/127 (29%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Frame = +2
Query: 98 IFICISGLFHNSVS-IDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQF 274
+ I + GL +S +++DSW+ ++++H+L N E + RG++++ S+ +G + ++Q
Sbjct: 8 VLIFVLGLVSSSWGFLEHDSWITVELQHSLAANSESFSFRGNVTIPSLNSGLANVEQPDL 67
Query: 275 SKQHIEELKRLAEVDGFYTLKSTVTSTENNKGTEFLSSMKAIAFLDSGFSDTINSWVLPN 454
S ++ LK+LA + FY LK+TV + N +F++S KA L + +D + + P+
Sbjct: 68 STADLDLLKKLALGNEFYRLKATVVYS-NGAKAQFITSNKACRLLQAQLNDVLWVSLEPS 126
Query: 455 GAVTAVS 475
G VT ++
Sbjct: 127 GYVTGIT 133
>AE014296-3581|AAN12181.1| 198|Drosophila melanogaster CG32441-PB,
isoform B protein.
Length = 198
Score = 74.9 bits (176), Expect = 7e-14
Identities = 34/112 (30%), Positives = 69/112 (61%)
Frame = +2
Query: 140 IDYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQHIEELKRLAEVD 319
+++DSW+ ++++H+L N E + RG++++ S+ +G + ++Q S ++ LK+LA +
Sbjct: 10 LEHDSWITVELQHSLAANSESFSFRGNVTIPSLNSGLANVEQPDLSTADLDLLKKLALGN 69
Query: 320 GFYTLKSTVTSTENNKGTEFLSSMKAIAFLDSGFSDTINSWVLPNGAVTAVS 475
FY LK+TV + N +F++S KA L + +D + + P+G VT ++
Sbjct: 70 EFYRLKATVVYS-NGAKAQFITSNKACRLLQAQLNDVLWVSLEPSGYVTGIT 120
>AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-PA
protein.
Length = 1833
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 233 SMRAGTSIIDQIQFSKQHIEELKRLAEVDGFYTLKSTVTSTENN-KGTEFLSSMKAIAFL 409
S+ T + DQ++F++ EEL+RL + + S T TE + F + +A +
Sbjct: 585 SIERETDLKDQLKFAE---EELQRLRDRERKRVRFSCGTQTEVPLEVVAFPRGTQTVATV 641
Query: 410 DSGFSDTINSWVLPNGAVTAVSFQV 484
S S ++ + V N AVT F+V
Sbjct: 642 QSDMSTSVENLVTSNVAVTQTDFEV 666
>AE014297-1582|AAF54862.1| 512|Drosophila melanogaster CG5999-PA
protein.
Length = 512
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = -1
Query: 417 PLSRKAMAFIDDRNSVPLLFSVDVTVDFRV*NPSTSASLFNSSICCFENCIWSMID---V 247
PL + F+ + +L S+ V + NP T A +FN E IW D
Sbjct: 268 PLPQNIAEFLGNATDGAILLSLGSNVQGKHLNPDTVAKMFNVLSKLKERVIWKWEDQENT 327
Query: 246 P---ALILFSEMLPR 211
P A IL+S+ LP+
Sbjct: 328 PGKSANILYSKWLPQ 342
>Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subunit
of RNA polymeraseI (A) protein.
Length = 1644
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 380 LSSMKAIAFLDSGFSDTINSWVLPNGAVTAVSFQVNNSSQPLVHNANGYKLNSI 541
L K + LD G+++ INS LP G +T F NN ++ A G +N++
Sbjct: 839 LLDRKYKSLLD-GYTNDINSTCLPRGLIT--KFPSNNLQLMVLSGAKGSMVNTM 889
>AE014298-846|AAF46127.2| 2893|Drosophila melanogaster CG15899-PB
protein.
Length = 2893
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 254 IIDQIQFSKQHIEELKRLAEVDGFYTLKSTVTSTENNK--GTEFLSSMKAIAFL 409
++ QFS+ E++R+ + YT ST+ S+ NN T + +K IA L
Sbjct: 314 VVIATQFSETKKREMERMRQERARYTSTSTLASSTNNSEPATCYAEIVKYIAHL 367
>AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-PA
protein.
Length = 1642
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 380 LSSMKAIAFLDSGFSDTINSWVLPNGAVTAVSFQVNNSSQPLVHNANGYKLNSI 541
L K + LD G+++ INS LP G +T F NN ++ A G +N++
Sbjct: 838 LLDRKYKSLLD-GYTNDINSTCLPRGLIT--KFPSNNLQLMVLSGAKGSMVNTM 888
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,102,028
Number of Sequences: 53049
Number of extensions: 417521
Number of successful extensions: 1055
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2172596895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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