Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H23
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040641-5|AAB94944.1|  379|Caenorhabditis elegans Hypothetical ...    31   0.75 
Z93377-10|CAB07574.2|  321|Caenorhabditis elegans Hypothetical p...    29   3.0  
AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical ...    28   5.3  

>AF040641-5|AAB94944.1|  379|Caenorhabditis elegans Hypothetical
           protein D1069.4 protein.
          Length = 379

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 83  HRYISIFICISGLFHNSVSI 142
           HRY  +FICI G+F N++ I
Sbjct: 35  HRYACLFICIVGVFSNAIHI 54


>Z93377-10|CAB07574.2|  321|Caenorhabditis elegans Hypothetical
           protein F13A7.2 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +3

Query: 42  FFFKLKVQIVY*KCIDIFLFLYVLVVYFIIRSVST 146
           +FF+   Q+VY  C+ +++ +Y+L+  F  +++ T
Sbjct: 6   YFFRYYWQLVYMICLMLYITMYILIYNFTGKTLQT 40


>AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical
           protein C35A11.1 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 80  MHRYISIFICISGLFHNSVSIDYDSWLNIKIEHTLNC 190
           +H Y+ + IC+ G+F N V +   S  N++    +NC
Sbjct: 34  IHGYVCVLICVFGIFTNFVHVAVLSRPNMR-NSAVNC 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,024,008
Number of Sequences: 27780
Number of extensions: 241724
Number of successful extensions: 691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)