Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H23
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   6.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   6.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.5  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 482 VNNSSQPLVHNANGYKLN 535
           +++ S   +HN N YK N
Sbjct: 82  ISSLSNKTIHNNNNYKYN 99


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 482 VNNSSQPLVHNANGYKLN 535
           +++ S   +HN N YK N
Sbjct: 82  ISSLSNKTIHNNNNYKYN 99


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 482 VNNSSQPLVHNANGYKLN 535
           +++ S   +HN N YK N
Sbjct: 82  ISSLSNKTIHNNNNYKYN 99


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 482 VNNSSQPLVHNANGYKLN 535
           +++ S   +HN N YK N
Sbjct: 82  ISSLSNKTIHNNNNYKYN 99


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 482 VNNSSQPLVHNANGYKLN 535
           +++ S   +HN N YK N
Sbjct: 82  ISSLSNKTIHNNNNYKYN 99


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 482 VNNSSQPLVHNANGYKLN 535
           +++ S   +HN N YK N
Sbjct: 315 ISSLSNKTIHNNNNYKYN 332


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 482 VNNSSQPLVHNANGYKLN 535
           +++ S   +HN N YK N
Sbjct: 82  ISSLSNRTIHNNNNYKYN 99


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 61  TFNLKKNIFYLLDSV*G 11
           TFN+K + F L+D + G
Sbjct: 234 TFNIKGDTFDLMDGILG 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,583
Number of Sequences: 438
Number of extensions: 3003
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)