Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H23
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78800.1 68414.m09184 glycosyl transferase family 1 protein c...    30   0.92 
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    29   1.6  
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    29   2.8  
At2g23810.1 68415.m02843 senescence-associated family protein si...    29   2.8  
At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D, puta...    29   2.8  
At2g31100.1 68415.m03798 lipase, putative similar to lipase [Dia...    27   8.6  

>At1g78800.1 68414.m09184 glycosyl transferase family 1 protein
           contains similarity to glycosyltransferase GI:871530
           from [Saccharomyces cerevisiae], Alg2
           mannosyltransferase [gi:3868942] from Rhizomucor
           pusillus; contains Pfam profile: PF00534 Glycosyl
           transferases group 1
          Length = 403

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 15/66 (22%), Positives = 35/66 (53%)
 Frame = +2

Query: 209 HRGSISLKSMRAGTSIIDQIQFSKQHIEELKRLAEVDGFYTLKSTVTSTENNKGTEFLSS 388
           H+ ++S  ++       ++++ + +++EEL+ LAE +G     + +TS    +  E LSS
Sbjct: 237 HKQNLSDVTLTVAGGYDERLKENVEYLEELRSLAEKEGVSDRVNFITSCSTAERNELLSS 296

Query: 389 MKAIAF 406
              + +
Sbjct: 297 CLCVLY 302


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 347 TSTENNKGTEFLSSMKAIAFLDSGFSDTINSWVL 448
           TS E      +++S+ A+ ++D+ F D  N WVL
Sbjct: 387 TSREERCFRHWMNSLGAVTYVDNVFEDVRNGWVL 420


>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
           putative similar to SP|Q03460 Glutamate synthase [NADH],
           chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
           {Medicago sativa}
          Length = 2208

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 101 FICISGLFHNSVSID-YDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFS 277
           F     L H+  S + + SW   +    L  NGE    RG+++    R G    +++  S
Sbjct: 322 FTSYMALVHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMRAREGLLKCNELGLS 381

Query: 278 KQHIEELKRLAEV 316
           K+ +++L  + +V
Sbjct: 382 KKELKKLLPIVDV 394


>At2g23810.1 68415.m02843 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 195

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +2

Query: 143 DYDSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQHIEELK----RLA 310
           DY +WL  ++E+  N N  + C   S     + A    +    F K+H+  L+    + +
Sbjct: 39  DYSTWLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPS 98

Query: 311 EVDGFYTLKSTVTSTENNKGT 373
           +  GF  +  T T T+N  GT
Sbjct: 99  DECGFEYVNPT-TWTKNTTGT 118


>At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D,
           putative / snRNP core SM-like protein, putative / U6
           snRNA-associated Sm-like protein, putative similar to
           SWISS-PROT:Q9Y333 U6 snRNA-associated Sm-like protein
           LSm2 (Small nuclear ribonuclear protein D homolog, G7b,
           SnRNP core SM-like protein SM-x5) [Homo sapiens]
          Length = 93

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +2

Query: 149 DSWLNIKIEHTLNCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQHIE 292
           D +LNIK+E+T   + +KY H   +S+++     S++  +Q  K  ++
Sbjct: 33  DQYLNIKLENTRVVDQDKYPH--MLSVRNCFIRGSVVRYVQLPKDGVD 78


>At2g31100.1 68415.m03798 lipase, putative similar to lipase
           [Dianthus caryophyllus] GI:4103627; contains Pfam
           profile PF01764: Lipase (class 3)
          Length = 355

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = +2

Query: 185 NCNGEKYCHRGSISLKSMRAGTSIIDQIQFSKQHIEELKRLAEVDGFYTLKSTVTSTENN 364
           N N E     G +SL +     S  D+    +Q  EELKRL E+  +     T+T T ++
Sbjct: 107 NPNDEPRVANGWLSLYTSTDPRSRFDKTSAQEQVQEELKRLLEL--YKNEDVTITLTGHS 164

Query: 365 KGTEFLSSMKAIAFL 409
            G   +S + A  FL
Sbjct: 165 LGA-VMSILSAADFL 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,031,501
Number of Sequences: 28952
Number of extensions: 212634
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)