Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H22
(563 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 381 e-106
SB_56| Best HMM Match : Actin (HMM E-Value=0) 380 e-106
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 380 e-106
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 378 e-105
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 276 8e-75
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 244 3e-65
SB_54| Best HMM Match : Actin (HMM E-Value=0) 231 4e-61
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 216 9e-57
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 202 2e-52
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 172 1e-43
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 106 1e-23
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 89 3e-18
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 73 2e-13
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 2e-05
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.001
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 40 0.002
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.49
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.49
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 31 0.49
SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8) 31 0.65
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 29 2.0
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 29 2.0
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 29 2.6
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3) 28 4.6
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_29911| Best HMM Match : 7tm_1 (HMM E-Value=0.0026) 27 8.0
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_52691| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_38643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 381 bits (937), Expect = e-106
Identities = 180/185 (97%), Positives = 183/185 (98%)
Frame = +3
Query: 9 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 188
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 189 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 368
MTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRL 179
Query: 369 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDVEQEMATAASSSSLEK 548
DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD EQEM TAASSSSLEK
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSLEK 239
Query: 549 SYELP 563
SYELP
Sbjct: 240 SYELP 244
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 380 bits (936), Expect = e-106
Identities = 180/185 (97%), Positives = 183/185 (98%)
Frame = +3
Query: 9 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 188
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 189 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 368
MTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRL 178
Query: 369 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDVEQEMATAASSSSLEK 548
DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD EQEM TAASSSSLEK
Sbjct: 179 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEK 238
Query: 549 SYELP 563
SYELP
Sbjct: 239 SYELP 243
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 380 bits (934), Expect = e-106
Identities = 179/185 (96%), Positives = 183/185 (98%)
Frame = +3
Query: 9 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 188
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 189 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 368
MTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RL
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRL 179
Query: 369 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDVEQEMATAASSSSLEK 548
DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD EQEM TAASSSSLEK
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSLEK 239
Query: 549 SYELP 563
SYELP
Sbjct: 240 SYELP 244
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 378 bits (929), Expect = e-105
Identities = 179/185 (96%), Positives = 183/185 (98%)
Frame = +3
Query: 9 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 188
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 189 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 368
MTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRL 178
Query: 369 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDVEQEMATAASSSSLEK 548
DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVALD EQEMATAA+SSSLEK
Sbjct: 179 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEK 238
Query: 549 SYELP 563
SYELP
Sbjct: 239 SYELP 243
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 276 bits (677), Expect = 8e-75
Identities = 144/185 (77%), Positives = 149/185 (80%)
Frame = +3
Query: 9 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 188
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 189 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 368
MTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DS G + H +
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDS------------GDGVSHTV--- 164
Query: 369 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDVEQEMATAASSSSLEK 548
I ERGYSFTTTAEREIVRDIKEKLCYVALD EQEM TAASSSS+EK
Sbjct: 165 ------------PIYEERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSIEK 212
Query: 549 SYELP 563
SYELP
Sbjct: 213 SYELP 217
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 244 bits (598), Expect = 3e-65
Identities = 118/129 (91%), Positives = 124/129 (96%)
Frame = +3
Query: 177 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 356
N + M +IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 357 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDVEQEMATAASSS 536
I+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD EQEM TAASSS
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSS 197
Query: 537 SLEKSYELP 563
SLEKSYELP
Sbjct: 198 SLEKSYELP 206
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = +3
Query: 9 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 104
QSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 231 bits (564), Expect = 4e-61
Identities = 104/160 (65%), Positives = 129/160 (80%)
Frame = +3
Query: 84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 263
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 264 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 443
ASGRTTG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +T
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Query: 444 AEREIVRDIKEKLCYVALDVEQEMATAASSSSLEKSYELP 563
AE++I+RD+KE LCY A+D E+E+ A +S E Y LP
Sbjct: 2249 AEQQIIRDLKETLCYCAMDYERELKEAETSDDCEAPYMLP 2288
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 216 bits (528), Expect = 9e-57
Identities = 97/183 (53%), Positives = 133/183 (72%), Gaps = 1/183 (0%)
Frame = +3
Query: 18 RGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMT 194
R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM
Sbjct: 65 RYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMI 124
Query: 195 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 374
++MFE + +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YEG+ALPH RLD+
Sbjct: 125 EVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDI 184
Query: 375 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDVEQEMATAASSSSLEKSY 554
AGRD+T YL+K++ RGY+F TA+ E VR +KEKLCYV ++EQE A ++ L + Y
Sbjct: 185 AGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQEQKLALETTVLVEQY 244
Query: 555 ELP 563
LP
Sbjct: 245 TLP 247
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 202 bits (493), Expect = 2e-52
Identities = 95/106 (89%), Positives = 101/106 (95%)
Frame = +3
Query: 198 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 377
IMFE FN+PA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 378 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDVEQEM 515
GRDLTDYLMK++TERGYSFTTTAEREIVRDIKEKLCYVALD QE+
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 172 bits (419), Expect = 1e-43
Identities = 74/116 (63%), Positives = 101/116 (87%)
Frame = +3
Query: 132 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 311
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 312 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 479
SH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 106 bits (254), Expect = 1e-23
Identities = 47/126 (37%), Positives = 80/126 (63%)
Frame = +3
Query: 42 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 221
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 222 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 401
PA ++ +VL+ +A+GR+ G+V+DSG + VP+++GY L AI+R LAG +T
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQC 122
Query: 402 MKILTE 419
++ E
Sbjct: 123 RQMFEE 128
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 88.6 bits (210), Expect = 3e-18
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +3
Query: 243 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL-TE 419
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 420 RGYSFTTTAEREIVRDIKEKLCYVALDVEQEMATAASSSSLEKSYELP 563
RG++FT+++ +IV DIKEK+CY++ D +E+ ++ L K Y LP
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLP 874
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 72.5 bits (170), Expect = 2e-13
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +3
Query: 210 TFNTPAMYVAIQAVLSLYASGRT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 386
++ T A+ + S RT TG V+DSGDGV+H +P+ EGY + I + +AGRD
Sbjct: 38 SYATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRD 97
Query: 387 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDVEQEMA 518
+T ++ ++L ER E + IKE+ Y+ D+ +E A
Sbjct: 98 ITFFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFA 141
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 36 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 149
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 279 TGIVLDSGDGVSHTVPI 329
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 87 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 266
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 267 SGRTTGIV 290
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Frame = +3
Query: 42 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 221
P + G + NWD ++IW +TF E + M +I+FE +N
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE--------------------GLEDAMDEILFEEYNF 331
Query: 222 PAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 365
A+ A LS Y S +V+D+G +H VP++ G + A+ R
Sbjct: 332 KALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKVIKKAVRR 385
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 33 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 185
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 31.5 bits (68), Expect = 0.49
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 174 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 290
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 31.5 bits (68), Expect = 0.49
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 172 KPTERR*HRLCSRPS--THPPCT*LSRPCSHCTRPVVPPVSCWIPAMVYPTQYPS-TRVT 342
+P++ LC RPS PC PC P V PV + V P + PS VT
Sbjct: 357 RPSKSVSDTLC-RPSEVAVTPCVDPVTPCVDPVTPYVDPVKVAVTPCVDPVKVPSEVAVT 415
Query: 343 PCRTP 357
PC P
Sbjct: 416 PCVDP 420
>SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8)
Length = 291
Score = 31.1 bits (67), Expect = 0.65
Identities = 35/109 (32%), Positives = 42/109 (38%)
Frame = -1
Query: 461 NDFTLGGGGERVTTLCENLHQVVCEVATG*VQTQDGVRQGVTLVDGYCVGYTIAGIQHDT 282
N T GGGG V T L V+ G +GV G + +GY T G Q
Sbjct: 98 NAGTGGGGGSFVYTSDRRL-LVIAGGGGGASNGYNGV-DGQSGENGYRSSGTNYG-QSRA 154
Query: 281 GGTTGRVQ*EHGLDSYVHGGCVEGLEHNLCHLLSVGFGVEGSFGEQDWV 135
GGT G + S HGG G + C L G G E+ WV
Sbjct: 155 GGTGGNPGECNSAGSSYHGGVGAGWDGTGCTRLGPEHGERGGSIEKGWV 203
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 30.7 bits (66), Expect = 0.86
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = +1
Query: 151 PKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVVPPVSCWIPA-MVYPTQYP 327
PK K + + C PP ++ PC+ P PPV PA M+ P P
Sbjct: 1342 PKANKVGKDKHNKGTKKCYGACAPPP---MADPCATMAAPCAPPVMMAAPAPMLAPMLAP 1398
Query: 328 STRVTPCRTPSC 363
PC P C
Sbjct: 1399 MP--APCAPPEC 1408
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 30.7 bits (66), Expect = 0.86
Identities = 22/75 (29%), Positives = 26/75 (34%)
Frame = +1
Query: 136 TQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVVPPVSCWIPAMVYP 315
T + P P+TPKPT PP P TRP VP + P
Sbjct: 890 TTTAPPTTPTTPKPTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRP 949
Query: 316 TQYPSTRVTPCRTPS 360
T P T P P+
Sbjct: 950 TPPPPTSALPPPIPA 964
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 268 DAYSESTAWIATYMAGVLKVSNIICVIFSLLALGLR 161
D SE AT+ AG L + +IC+++ LLA R
Sbjct: 1839 DEESEMFRQAATWSAGALGILTVICLLYELLARSRR 1874
>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
Length = 361
Score = 29.5 bits (63), Expect = 2.0
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Frame = +1
Query: 100 PSTMS-CV*LPRSTQSC-SPKLPSTPKPTERR*HRL--CSRPST-----HPPCT*LSRPC 252
P+T+ C P + + C SP P+T +P + + C P T H P T + RPC
Sbjct: 148 PNTVRPCHSPPNTVRPCHSP--PNTVRPCHSPPNTVHPCHSPLTAVHPCHSPLTAV-RPC 204
Query: 253 SHCTRPVVPPVSCWIPAMVYPTQYPSTRVTPCRTP 357
V P S P V+P P T V PC +P
Sbjct: 205 HSPPNTVRPCHSP--PTAVHPCHSPLTAVRPCHSP 237
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +1
Query: 193 HRLCSRPSTHPPC---T*LSRPCSHCTRPVVPPVSCWIPAMVYPTQYPSTRVTPCRTP 357
H S P+T PC RPC V P S P V+P P T V PC +P
Sbjct: 22 HPCHSPPNTVHPCHSPPNTVRPCHSPPNTVRPCHSP--PTAVHPCHSPPTAVRPCHSP 77
Score = 27.5 bits (58), Expect = 8.0
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Frame = +1
Query: 100 PSTMS-CV*LPRSTQSC-SPKLPSTPKPTERR*HRLCSRPSTHP-PCT*LSRPCSHCTRP 270
P+T+ C P + + C SP P + R C P T PC C P
Sbjct: 38 PNTVRPCHSPPNTVRPCHSPPTAVHPCHSPPTAVRPCHSPPTAVHPCHSPPNTVRPCHSP 97
Query: 271 VVPPVSCWIP-AMVYPTQYPSTRVTPCRTP 357
+ C P V+P P V PC +P
Sbjct: 98 LTAVHPCHSPPTAVHPCHSPPNTVRPCHSP 127
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 133 STQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSH 258
ST + P +P PT S P+THP T S P +H
Sbjct: 112 STPTTHPHIPHASTPTTHPHITHASTPTTHPHITHASTPTTH 153
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +1
Query: 133 STQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVVPPVSCWIPAMVY 312
ST + P + PT S P+THP T S P +H P + S P + Y
Sbjct: 124 STPTTHPHITHASTPTTHPHITHASTPTTHPHITHASTPTTH---PHIAHASTTHPYITY 180
Query: 313 ---PTQYP 327
PT +P
Sbjct: 181 ASTPTTHP 188
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 211 PSTHPPCT*LSRPCSHCTRPVVPPVSCWIPAMVYPTQYPSTRVTP 345
P+T PP P + PVV +P V PT+ PSTR P
Sbjct: 99 PTTVPPPVVTDAPTT-VPPPVVTDAPTTVPPPVQPTEPPSTRPPP 142
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 162 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 290
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1521
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -2
Query: 313 DTPSPESSTIPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFSLLALG--LRGASVSKT 140
+TPSP + P PDA TAW + L+ S + V S G LRGA K
Sbjct: 90 ETPSPALESAPAAMPDA--TDTAWTCLIVTYYLE-SEALHVSASASRSGRRLRGADAGKR 146
Query: 139 G 137
G
Sbjct: 147 G 147
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/88 (27%), Positives = 31/88 (35%)
Frame = +1
Query: 97 TPSTMSCV*LPRSTQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVV 276
TP T P T +P PS PT + P+T P + P P
Sbjct: 19 TPQTTPTPTKPTPTTH-TPTKPSPTTPTSTAPTQTTPTPTTPSP----TAPTQTTPTPAT 73
Query: 277 PPVSCWIPAMVYPTQYPSTRVTPCRTPS 360
P + P PT T+ TP TP+
Sbjct: 74 PTPTTPTPKTPTPTTSTLTKPTPATTPT 101
>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
Length = 736
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = -2
Query: 313 DTPSPESSTIPVVRPDAYSESTAW---IATYM--AGVLKVSNIICVIFSLLALGLRGASV 149
+TP+P + P PDA TAW TY + L V+ C LRGA+
Sbjct: 90 ETPTPALESAPAAMPDA--TDTAWNRLSVTYFLESEALHVAADACRNGRRHMRTLRGANT 147
Query: 148 SKTGCS 131
K GC+
Sbjct: 148 GKRGCA 153
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 27.9 bits (59), Expect = 6.1
Identities = 25/94 (26%), Positives = 38/94 (40%)
Frame = +1
Query: 97 TPSTMSCV*LPRSTQSCSPKLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVV 276
T +T+ P +TQ + +PST +PT + + PST P T + T +
Sbjct: 209 TTTTLPSTKQPTTTQQTTTTIPSTKQPTTTQ-QTTTTLPSTKQPTT------TQQTTTTL 261
Query: 277 PPVSCWIPAMVYPTQYPSTRVTPCRTPSCVWT*P 378
P + T +PST+ P T T P
Sbjct: 262 PSTKQPTTPQLTTTTFPSTK-QPTTTQQTTATLP 294
>SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 702
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/84 (22%), Positives = 37/84 (44%)
Frame = -2
Query: 307 PSPESSTIPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFSLLALGLRGASVSKTGCSS 128
P+P V P+ WIA ++ + +IC + L+AL +R S+ SS
Sbjct: 168 PAPRQVYCDEVWPEGPYSRVYWIAIFVIQYILPLGMICALAMLIALKVRRNSLKMIEKSS 227
Query: 127 GATRSSL*KV*CQIFSISSQLVTM 56
+++ + Q I++ L+ +
Sbjct: 228 HVLAAAVRQRMKQTSKITNMLIAL 251
>SB_29911| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)
Length = 197
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 286 IPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFSLL 176
+ VV D Y + +ATY+ L VSN++ V+ +L
Sbjct: 27 VVVVYKDPYKQLKKNLATYLIAGLAVSNLLLVVGEIL 63
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +3
Query: 177 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 326
NR + +++ E + ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_3368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 23 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ 109
Y H Q+P+ TR H RY + ++ H L+
Sbjct: 41 YKHAQVPNSTRTLHL--RYSQQISPHFLE 67
>SB_52691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 138 GAPRELHAAHCRRCDARSSPYRPSW 64
G R AA C++CDARS +P W
Sbjct: 3 GVLRVQLAARCKKCDARSD-IKPEW 26
>SB_38643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 127 PRSTQSCSPKLPSTPKPT 180
P+S +C+P PS PKP+
Sbjct: 1 PKSLHACAPPKPSVPKPS 18
>SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1078
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Frame = +1
Query: 211 PSTHPPCT*LSRPCSHCTR-----PVVPPVSCWIPAMVYPTQ 321
P P T L CSHC R P PP +PA YP Q
Sbjct: 828 PGITPAITALRERCSHCNRMTPPQPSAPPYPSTLPA--YPFQ 867
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,737,463
Number of Sequences: 59808
Number of extensions: 448900
Number of successful extensions: 1553
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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