Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H21
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   140   1e-34
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   138   3e-34
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   0.63 
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   1.5  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   2.5  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   2.5  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   5.9  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   5.9  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    25   7.8  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.8  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   7.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   7.8  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  140 bits (338), Expect = 1e-34
 Identities = 68/125 (54%), Positives = 92/125 (73%)
 Frame = +1

Query: 34  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQF 213
           ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++  + NLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 214 AWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 393
            W   Y+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R++   +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116

Query: 394 AYRRA 408
            YRRA
Sbjct: 117 GYRRA 121


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  138 bits (335), Expect = 3e-34
 Identities = 69/125 (55%), Positives = 91/125 (72%)
 Frame = +1

Query: 34  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQF 213
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++  + NLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 214 AWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 393
            W   Y+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R + D +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115

Query: 394 AYRRA 408
            YRRA
Sbjct: 116 GYRRA 120


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 347 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 448
           Q AGL+  HE L+  ++  AH +  LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 153 VTDLLEIWMFGCMVVFLSYHDSLLE 79
           +T+  +IW FGC +  + +H S  E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 439  PSYHEELQLVVRADKLIYLQLFVLEHQACQLHHDVLSLYALTSSGLLVQ-FQEVSAGKF* 263
            PSY +     +  +K ++L L  L H   +    +LSLY  + +  +V+    V    F 
Sbjct: 992  PSYFDVFFPSLGMEKRVHLDLLNLTHVRFEEDQGILSLYDESGAVTVVKLLTSVKVKLFV 1051

Query: 262  GIQYPHLLNTS 230
             +  P L+N S
Sbjct: 1052 QLSTPPLINVS 1062


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 355 RPDAPARTAEDRSAYRRAPPAGAPH 429
           +P  P +     + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 253 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 357
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -2

Query: 332 VSVRTDLFRVAGTISGGKCRKILRYSIPSFVKYQYKCLHANCSLTYPLDLSDCI 171
           + V+T L R+A           + Y+I + V +  + +H+    T+ LD+ D +
Sbjct: 4   IHVKTALSRLADKYLQNSKNPSVPYTIETIVSFFQEIIHSISPDTFQLDIDDIL 57


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 234 PVQMPPCELFLNISS 190
           P  +PPCE+FL+ +S
Sbjct: 140 PSYLPPCEVFLDFTS 154


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +1

Query: 283 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 426
           PP   P +   S    T    A     APA  A    AY  AP    P
Sbjct: 58  PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 246 IC*IPVQMPPCELFLNISSRFK*LHSFDHL 157
           +C +P++ P C L L +S+      S+ HL
Sbjct: 318 VCTLPIECPSCSLVLILSTHL--ARSYHHL 345


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 286 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 393
           P I P ++   V   TVR G+   PD P+ +   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,416
Number of Sequences: 5004
Number of extensions: 37086
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)