Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H21
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 143 7e-35
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 143 7e-35
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 136 6e-33
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 32 0.21
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 0.63
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432... 30 0.83
03_06_0519 - 34481751-34482722 29 1.9
02_01_0462 + 3332464-3332470,3333606-3335806 29 2.5
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 28 3.3
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 28 4.4
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 28 4.4
10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594 27 7.7
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 27 7.7
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 27 7.7
05_03_0373 - 13194723-13195847,13196219-13196809 27 7.7
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 27 7.7
01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852 27 7.7
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 143 bits (346), Expect = 7e-35
Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 8/154 (5%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQF 213
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ + NLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 214 AWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 384
+W++ YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 385 DRSAY-----RRAPPAGAPHDKKADVGPGSADVE 471
DR + R P GAP D + G A+ +
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQ 153
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 143 bits (346), Expect = 7e-35
Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 8/154 (5%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQF 213
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ + NLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 214 AWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 384
+W++ YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 385 DRSAY-----RRAPPAGAPHDKKADVGPGSADVE 471
DR + R P GAP D + G A+ +
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQ 153
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 136 bits (330), Expect = 6e-33
Identities = 72/154 (46%), Positives = 98/154 (63%), Gaps = 8/154 (5%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQF 213
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ + NL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 214 AWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGAVG-RPDAPARTAE 384
+W+H YWYLTN+GIE+LR +L+LP E+VP TLK+S + + G G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 385 DRSAY-----RRAPPAGAPHDKKADVGPGSADVE 471
DR + R P GAP D + G A+ +
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQ 153
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 32.3 bits (70), Expect = 0.21
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 64 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQFAWRHLYWYL 240
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E +Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 241 TNEGIE-YLRIFLHLP 285
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 0.63
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 371 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 267
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>05_04_0080 -
17742425-17742578,17742855-17743038,17743202-17743273,
17743343-17743469,17743915-17744135,17744234-17744387
Length = 303
Score = 30.3 bits (65), Expect = 0.83
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 64 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQFAWRHLYWYL 240
+Y+ L +G +VA KK AP+ E++R L I + GY +E +Y YL
Sbjct: 98 VYKGLLLDGSVVAIKKRIGAPRQEFAEEVRKLSEINHRNIVTLIGYCQEGGLQMLVYEYL 157
Query: 241 TNEGI 255
N +
Sbjct: 158 PNGSV 162
>03_06_0519 - 34481751-34482722
Length = 323
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 337 RRGAVGRPDAPARTAEDRSAYRRAPP-AGAPHDKKADVGPGSAD 465
R+G G PA ++ + RR+ AGAP D A+ GP S +
Sbjct: 23 RKGKRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTN 66
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 128 IQISRRSVTSK*-SKLCNHLNLE--DMLRNSSHGGICTGI*QMRVLNTLEFSCTYLL 289
I +S S++ + S+L N L+ +M RN +GGI I + V+ +L+ SC LL
Sbjct: 554 IDLSSNSLSGEIPSELTNLRGLQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLL 610
>02_05_0999 + 33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 302 AGTISGGKCRKILRYSIPSFVKYQYKCLHANCSLTYPLD 186
A I GG LR IPS+ ++K L NC + P D
Sbjct: 1026 AAAIIGGIVNNSLRPQIPSWCDPEWKSLMENCWASEPAD 1064
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +1
Query: 163 IKAMQSLKSRGYVKEQFAWRHL---YWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 333
I + L S G WR + + YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 334 VR--RGA---VGRPDAPARTAED 387
R +G+ + +P PA + +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +1
Query: 280 LPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 417
LPP + LKR V RR + PD R +Y R PPA
Sbjct: 510 LPPPVRSRPLKRPVDIRD-RRPVMSIPDRVRRLPPPERSYDRRPPA 554
>10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594
Length = 320
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/89 (21%), Positives = 35/89 (39%)
Frame = +1
Query: 157 QVIKAMQSLKSRGYVKEQFAWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETV 336
++ + + K + + + Q A L Y+ + ++ L+ ATL V++
Sbjct: 131 EIFQGTKKFKQQVFDQVQLALNELGLYIYSANVQDSNAALYDRQMAADATLFEQVKSAEA 190
Query: 337 RRGAVGRPDAPARTAEDRSAYRRAPPAGA 423
R+ G + AED Y R A A
Sbjct: 191 RKAQAGAKFFEQKLAEDARLYARQREAEA 219
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 283 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 417
PPE L+ + RRG +P P A + + +PPA
Sbjct: 100 PPEAASEALRGAASPPERRRGGDRQPSHPTEAASEAPSGSASPPA 144
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +1
Query: 310 KRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 453
+R + T R GAV P PA D A +R PAG D A VGP
Sbjct: 74 RRKLPLATGRDGAVAGP--PADPVPD--ARQRRVPAGGGADPAAGVGP 117
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 292 IVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGA 423
++ + + E +RR + GR +R A++ RRA PAGA
Sbjct: 43 LISGAVSAAEPNERIRRSS-GRYIVASRRADEEDGLRRAVPAGA 85
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 343 GAVGRPDAPARTAEDRSAYRRAPP-AGAPHD 432
G GR R A D A RR P GAPHD
Sbjct: 105 GEAGRAGLRRRQAVDEVAARREEPQGGAPHD 135
>01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852
Length = 259
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/85 (23%), Positives = 34/85 (40%)
Frame = +1
Query: 166 KAMQSLKSRGYVKEQFAWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRG 345
K M ++ + KE+F + W + +++ +++ L RSV+ R+
Sbjct: 117 KKMLRIEQQQLDKEEFQEADILWPDAAQDLDFPQMYYSLVDADEDDDEHRSVKQHGNRQK 176
Query: 346 AVGRPDAPARTAEDRSAYRRAPPAG 420
A D PAR A PAG
Sbjct: 177 ASSPIDIPARKVSSAGAKGARAPAG 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,752,222
Number of Sequences: 37544
Number of extensions: 250180
Number of successful extensions: 964
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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