Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H21
(474 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0) 175 2e-44
SB_47364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_40181| Best HMM Match : Pox_A32 (HMM E-Value=0.0059) 28 4.5
SB_35742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1) 27 6.0
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 27 6.0
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2) 27 6.0
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0) 27 7.9
SB_9191| Best HMM Match : TolA (HMM E-Value=1) 27 7.9
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) 27 7.9
SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38) 27 7.9
>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
Length = 166
Score = 175 bits (425), Expect = 2e-44
Identities = 88/145 (60%), Positives = 103/145 (71%), Gaps = 4/145 (2%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQF 213
ML+PK+NRV IYEYLFKEGV VAKKD+++PKH +E + NL VIKA+QSLKSRGYV+E+F
Sbjct: 1 MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60
Query: 214 AWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVRRGAVGR--PDAPARTAE 384
W+H YW LTNEGI YLR FLHLP EIVPATL+R V R ET R G P P +
Sbjct: 61 CWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETARPRPKGMDGPRGPGEGGD 120
Query: 385 -DRSAYRRAPPAGAPHDKKADVGPG 456
DR +YRR PP G + K G G
Sbjct: 121 RDRESYRRGPPPGV--EGKGGAGSG 143
>SB_47364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 308 RVAGTISGGKCRKILRYSIPSFVKYQYKCLHA 213
R+A + G K+L+YS F Y Y CL+A
Sbjct: 254 RMAFPVQGAYILKLLQYSSSCFNPYLYTCLNA 285
>SB_40181| Best HMM Match : Pox_A32 (HMM E-Value=0.0059)
Length = 280
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 103 KKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQFAWRHLY 231
K D A H ++ ++ + M++LK++ + K +F WRH Y
Sbjct: 151 KADMKAILHDYDAELSEEKMKEYMKALKTKKFSKLEFCWRHPY 193
>SB_35742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1113
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 103 KKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQFAWRHLY 231
K D A H ++ ++ + M++LK++ + K +F WRH Y
Sbjct: 546 KADMKAILHDYDAELSEEKMKEYMKALKTKKFSKLEFCWRHPY 588
>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +1
Query: 262 LRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKA 441
L F+H PE +R R+ R GR ++ + T E RSA + AP D
Sbjct: 146 LPTFIHNEPETTTNNKRRMHRSLKFFRRPFGRTESNSDTDEARSARKTVHFKDAPMD-LT 204
Query: 442 DVGP 453
D+ P
Sbjct: 205 DINP 208
>SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)
Length = 864
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 388 YLQLFVLEHQACQLHHDVLSLYALTSSGLLVQF--QEVSAGKF*GIQYPHLLNTSTN 224
+LQL V+ H A +++H +L + + T G L F Q + +F ++ L N+ N
Sbjct: 509 FLQLIVVAHDALRVYHQILGI-SHTPGGELTLFFEQPIRRPRFVALRQCSLFNSWYN 564
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 293 ISGGKCRKILRYSIPSFVKYQYKCLHANCSLTY 195
+SGG + LRY+ P+ V C A CS+ Y
Sbjct: 3125 LSGGNLDRGLRYTAPNGVTVTSSCGLAPCSICY 3157
>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
Length = 2527
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 121 PKHPDLEKIRNLQVIKAMQSLKSRGYVKEQFAWRHLY 231
P+H D+ +I +L + + S Y QF W +LY
Sbjct: 1797 PRHVDIPEIYHLLIALLLGHPVSEVYAGAQFDWHNLY 1833
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 274 LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 453
LH P E ATL ++RT + A G+ + ++ R+P G D+ ADV
Sbjct: 967 LHPPNE---ATLPPTLRTTPQKSPAPGKEGKKVKKKKEGKKSGRSPREGVVTDEGADVDM 1023
Query: 454 G 456
G
Sbjct: 1024 G 1024
>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
Length = 1014
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 353 PTAPRRTVSVRTDLFRVAGTISGG 282
P RTV++ D+F AGT++GG
Sbjct: 464 PKVKTRTVTLEGDVFDPAGTLTGG 487
>SB_9191| Best HMM Match : TolA (HMM E-Value=1)
Length = 541
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 274 LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 453
LH P E ATL ++RT + A G+ + ++ R+P G D+ ADV
Sbjct: 157 LHPPNE---ATLPPTLRTTPQKSPAPGKEGKKVKKKKEGKKSGRSPREGVVTDEGADVDM 213
Query: 454 G 456
G
Sbjct: 214 G 214
>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
Length = 515
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 316 SVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDK-KADV 447
S ++ +G +AP+ +D AY PP P DK K+D+
Sbjct: 91 STENNVIKEDVIGPTNAPS---DDNDAYPTMPPDEEPKDKHKSDI 132
>SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -2
Query: 281 KCRKILRYSIPSFVKYQYKCLHA---NCSLTYPLDLSDCIALITWRLRIFSR 135
KC K+ + S+ + ++ K L A CS LDLS C+ + ++ SR
Sbjct: 170 KCPKLEKLSLSNCLRLTDKSLSAISRKCSSLKTLDLSGCVKITDRGIKALSR 221
>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 100 AKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQFAWRHLY 231
+K D A H ++ ++I+ M++LKS+ + K +F RH Y
Sbjct: 686 SKADMKAILHDYGAELSEEKMIEYMKTLKSKKFSKLEFCLRHPY 729
>SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38)
Length = 899
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +1
Query: 16 ESWLSKMLMPKQNRVSIYEYLFKEGVMVAKKDY 114
E W++ L+ ++NR+ + E L+K+ +++A + +
Sbjct: 491 ELWIAGQLVMRRNRIVLPESLWKQAIILAHEGH 523
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,417,190
Number of Sequences: 59808
Number of extensions: 282620
Number of successful extensions: 919
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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