Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H21
(474 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 142 8e-35
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 131 3e-31
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 127 3e-30
At5g36210.1 68418.m04365 expressed protein 28 2.8
At4g08470.1 68417.m01398 mitogen-activated protein kinase, putat... 28 2.8
At2g18870.1 68415.m02200 hypothetical protein contains 1 transme... 28 2.8
At5g39770.1 68418.m04817 repair endonuclease family protein cont... 27 4.9
At1g66510.3 68414.m07557 AAR2 protein family contains Pfam profi... 27 6.5
At1g66510.2 68414.m07556 AAR2 protein family contains Pfam profi... 27 6.5
At1g66510.1 68414.m07555 AAR2 protein family contains Pfam profi... 27 6.5
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 142 bits (345), Expect = 8e-35
Identities = 72/142 (50%), Positives = 93/142 (65%), Gaps = 6/142 (4%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQF 213
M++ + NR I +YLFKEGV+ AKKD++ P+HP +E + NLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 214 AWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAP-----AR 375
AW H YW+LTNEGI++LR +L+LP EIVPATLK+ + G G RP P R
Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGER 120
Query: 376 TAEDRSAYRRAPPAGAPHDKKA 441
DR YR P +G + KA
Sbjct: 121 RFGDRDGYRGGPKSGGEYGDKA 142
>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
Length = 177
Score = 131 bits (316), Expect = 3e-31
Identities = 67/137 (48%), Positives = 87/137 (63%), Gaps = 8/137 (5%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQF 213
M++ + NR I +YLFKEGV AKKD++ PKHP ++ + NLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 214 AWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--------TETVRRGAVGRPDAP 369
AW H YW+LTNEGIE+LR +L+LP ++VPATLK+S + R+ R D
Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGD 119
Query: 370 ARTAEDRSAYRRAPPAG 420
DR YR P G
Sbjct: 120 RPRFGDRDGYRGGPRGG 136
>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
contains similarity to 40S ribosomal protein S10
Length = 179
Score = 127 bits (307), Expect = 3e-30
Identities = 57/97 (58%), Positives = 76/97 (78%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQF 213
M++ + NR I +YLFKEGV AKKD++ KHP ++ + NLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 214 AWRHLYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 324
AW H YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96
>At5g36210.1 68418.m04365 expressed protein
Length = 676
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 31 KMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQ 159
K++ P Q+R IYE L K+G+ VA +Y +H K N++
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH-GFRKAENIK 643
>At4g08470.1 68417.m01398 mitogen-activated protein kinase, putative
similar to mitogen-activated protein kinase [Arabidopsis
thaliana] gi|1255448|dbj|BAA09057; contains Pfam
PF00069: Protein kinase domain
Length = 560
Score = 28.3 bits (60), Expect = 2.8
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +1
Query: 13 VESWLSKMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIRNLQVIKAMQSLKSR 192
+ SWL L+ + + S+YE + ++G D+ A K L + +Q + +Q L+
Sbjct: 300 ITSWLKGQLLGRGSYASVYEAISEDG------DFFAVKEVSLLD-KGIQAQECIQQLEGE 352
Query: 193 GYVKEQFAWRHLYWYL-TNEGIEYLRIFLHL 282
+ Q +++ Y T + + L IFL L
Sbjct: 353 IALLSQLQHQNIVRYRGTAKDVSKLYIFLEL 383
>At2g18870.1 68415.m02200 hypothetical protein contains 1
transmembrane domain; tandem duplication of fibronectin
type III domain protein (GI:3004551)
(TIGR_Ath1:At2g18880) [Arabidopsis thaliana]
Length = 239
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 106 KDYHAPKHPDLEKIRNLQVIKAMQSLKSRGYVKEQFAWRHLYWY 237
K A K+P+ + Q +K ++ L+ GYV+ F + L W+
Sbjct: 129 KPEKAKKNPESYGLGLEQCVKIIRKLECSGYVESTFRQKFLTWF 172
>At5g39770.1 68418.m04817 repair endonuclease family protein contains
Pfam PF02732 : ERCC4 domain; similar to MUS81
endonuclease (GI:16755674) [Mus musculus]; similar to
repair endonuclease (TIGR:At5g41150) [Arabidopsis
thaliana]
Length = 1242
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 143 RSVTSK*SKLCNHLNLEDMLRNSSHGGIC 229
RS+ S SKL N E+MLRN S+ IC
Sbjct: 1186 RSLASAYSKLDNVSAQEEMLRNQSNNVIC 1214
>At1g66510.3 68414.m07557 AAR2 protein family contains Pfam profile
PF05282: AAR2 protein
Length = 355
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 103 KKDYHAPKHPDLEKIRNLQVIKAMQSLKSRG-YVKEQFA-WRHLYWYLTNEGIE 258
++D K + E+ R Q +++++ K+ G Y +Q+ WRHL Y+T + +E
Sbjct: 43 QQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYNLKQYGEWRHLSNYITKDVVE 96
>At1g66510.2 68414.m07556 AAR2 protein family contains Pfam profile
PF05282: AAR2 protein
Length = 399
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 103 KKDYHAPKHPDLEKIRNLQVIKAMQSLKSRG-YVKEQFA-WRHLYWYLTNEGIE 258
++D K + E+ R Q +++++ K+ G Y +Q+ WRHL Y+T + +E
Sbjct: 87 QQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYNLKQYGEWRHLSNYITKDVVE 140
>At1g66510.1 68414.m07555 AAR2 protein family contains Pfam profile
PF05282: AAR2 protein
Length = 399
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 103 KKDYHAPKHPDLEKIRNLQVIKAMQSLKSRG-YVKEQFA-WRHLYWYLTNEGIE 258
++D K + E+ R Q +++++ K+ G Y +Q+ WRHL Y+T + +E
Sbjct: 87 QQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYNLKQYGEWRHLSNYITKDVVE 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,007,907
Number of Sequences: 28952
Number of extensions: 194644
Number of successful extensions: 594
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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