Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H20
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   107   1e-24
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   106   1e-24
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   5.7  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   7.5  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   7.5  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    24   9.9  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  107 bits (256), Expect = 1e-24
 Identities = 47/89 (52%), Positives = 64/89 (71%)
 Frame = +1

Query: 76  LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 255
           +L  +++D+  +LAA +H+G++N+  +ME YV+KRR DG H+INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 256 XXEDPADVFVISSRAFGQRAVLKFAAHTG 342
             E+PADV VISSR +G RAVLKFAAHTG
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTG 98



 Score = 58.0 bits (134), Expect = 7e-10
 Identities = 27/40 (67%), Positives = 29/40 (72%)
 Frame = +2

Query: 341 GATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 460
           GAT IAGRFTPG FTN I   +REPRL+IV DP  D Q I
Sbjct: 98  GATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAI 137


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  106 bits (255), Expect = 1e-24
 Identities = 45/93 (48%), Positives = 66/93 (70%)
 Frame = +1

Query: 64  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXX 243
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+KRR DG H++NL +TWEK     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 244 XXXXXXEDPADVFVISSRAFGQRAVLKFAAHTG 342
                 E+PADV V+S+R +G RAVLKFAAHTG
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTG 97



 Score = 57.6 bits (133), Expect = 9e-10
 Identities = 26/40 (65%), Positives = 29/40 (72%)
 Frame = +2

Query: 341 GATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 460
           GAT IAGRFTPG FTN I   +REPRL++V DP  D Q I
Sbjct: 97  GATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAI 136


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 323 NLLPTLGATPIAGRFTPGAFTNQIQAAFREPRLLIV 430
           NL+ T G T    R   G   N+I+  F E R LI+
Sbjct: 102 NLMTTDGTTKDDVRLPEGELGNEIEEGFDEGRDLII 137


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 49  NATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGD-GTHVIN 207
           N+T+SG  D  +++   +        +L A+N N Q E      R + G H+++
Sbjct: 204 NSTVSGSEDSASITTPSLRMREDVVAYLRADNKNLQYEPKSRSMRDETGYHMVD 257


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 323 NLLPTLGATPIAGRFTPGAFTNQIQAAFREPRLLIV 430
           NL+ T G T    R   G   N+I+  F E + LI+
Sbjct: 102 NLMTTDGTTKDDVRLPEGELGNEIEEGFEEGKDLII 137


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 255 DNSTSSEYKLFPCTPKINYVRTVT 184
           DNS SS    FP +PK++   TV+
Sbjct: 154 DNSISSNSDNFPPSPKVDTSNTVS 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,884
Number of Sequences: 5004
Number of extensions: 32831
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)