Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H20
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   106   8e-24
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   103   5e-23
04_04_0157 + 23165638-23166633                                         28   3.2  
05_03_0331 + 12488005-12488454,12488561-12489505                       27   7.4  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  106 bits (255), Expect = 8e-24
 Identities = 50/97 (51%), Positives = 63/97 (64%)
 Frame = +1

Query: 52  ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 231
           A   G    L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK 
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62

Query: 232 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTG 342
                     E+P D+ V S+R +GQRAVLKFA +TG
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG 99



 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = +2

Query: 341 GATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 460
           GA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI
Sbjct: 99  GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPI 138


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  103 bits (248), Expect = 5e-23
 Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 2/95 (2%)
 Frame = +1

Query: 64  GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 237
           GG    ALS  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 238 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTG 342
                   E+P D+ V S+R +GQRAVLKFA +TG
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG 99



 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = +2

Query: 341 GATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 460
           GA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI
Sbjct: 99  GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPI 138


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 227 FSHVRRRLITCVPSPRRL 174
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


>05_03_0331 + 12488005-12488454,12488561-12489505
          Length = 464

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 347 LRPVWAANLSTARWP 303
           +RPVW   + TARWP
Sbjct: 195 VRPVWEREVLTARWP 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,874
Number of Sequences: 37544
Number of extensions: 250552
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)