Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H20
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               127   5e-30
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.7  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  127 bits (306), Expect = 5e-30
 Identities = 57/95 (60%), Positives = 71/95 (74%)
 Frame = +1

Query: 58  MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 237
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR+ DG ++IN+++TWEK   
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 238 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTG 342
                   E+PADV VIS+R +GQRA+LK+A+HTG
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTG 95



 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 36/41 (87%), Positives = 37/41 (90%)
 Frame = +2

Query: 341 GATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 463
           GATPIAGRFTPG FTNQIQAAFREPRLLIV DP  DHQP+T
Sbjct: 95  GATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVT 135


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 276 ISWILHGDNSTSSEYKLFPCTPKINY 199
           + W L  +N+  +EY L P T K+ Y
Sbjct: 569 LEWFLKNENALPAEYVLQPVTAKLPY 594


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 279 HISWILHGDNSTSSEYKLFPCTPKINYVRTVTTAFINVRLHLEINIFRSQMGGRRKH 109
           ++S I H    T S  +LF C     + +  +T   ++ +H +I  F  +  G+R H
Sbjct: 249 YVSLIQH--KKTHSSVRLFECKKCGKHFKRSSTLSTHMLIHADIRPFSCEFCGKRFH 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,348,879
Number of Sequences: 59808
Number of extensions: 271471
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)