Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H20
         (464 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   100   4e-22
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...    99   1e-21
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    99   1e-21
At1g80540.1 68414.m09441 expressed protein ; expression supporte...    32   0.22 
At5g08260.1 68418.m00971 serine carboxypeptidase S10 family prot...    27   4.7  
At4g03940.1 68417.m00557 expressed protein                             27   6.2  
At2g17000.1 68415.m01960 mechanosensitive ion channel domain-con...    27   6.2  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    27   8.3  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  100 bits (240), Expect = 4e-22
 Identities = 46/90 (51%), Positives = 58/90 (64%)
 Frame = +1

Query: 79  LALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXX 258
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEK          
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 259 XEDPADVFVISSRAFGQRAVLKFAAHTGRN 348
            E+P D+ V S+R +GQRAVLKFA +TG N
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAN 101



 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = +2

Query: 341 GATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 460
           GA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI
Sbjct: 99  GANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPI 138


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 44/86 (51%), Positives = 58/86 (67%)
 Frame = +1

Query: 91  EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 270
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 271 ADVFVISSRAFGQRAVLKFAAHTGRN 348
            D+ V S+R +GQRAVLKFA +TG N
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVN 102



 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +2

Query: 341 GATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 460
           G   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI
Sbjct: 100 GVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPI 139


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 44/86 (51%), Positives = 58/86 (67%)
 Frame = +1

Query: 91  EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 270
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 271 ADVFVISSRAFGQRAVLKFAAHTGRN 348
            D+ V S+R +GQRAVLKFA +TG N
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVN 102



 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +2

Query: 341 GATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 460
           G   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI
Sbjct: 100 GVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPI 139


>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 279 HISWILHGDNSTSSEYKLFPCTPKINYVRT 190
           H +  + G N T+S Y   PC P +NY+RT
Sbjct: 79  HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108


>At5g08260.1 68418.m00971 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
           carboxypeptidase D - Triticum aestivum, PIR:A29639
          Length = 480

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = -3

Query: 411 SRNAAWIWLVNAPGVKRPAIGVAPSVGSKFKHSTLAKCT**DNKHISW 268
           SR    +WL   PG    A G A  +G    H    K T     H SW
Sbjct: 81  SRRPLVLWLNGGPGCSSIAYGAAQELGPFLVHDNGGKLT---YNHFSW 125


>At4g03940.1 68417.m00557 expressed protein 
          Length = 310

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 64  GGLDLLALSEEDVTKM--LAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTW 222
           G L LL  S+E   K   +   T +G   ++FQ+    Y+R G G + +  RR+W
Sbjct: 134 GVLALLQESQEKEAKTFKMYEATIVGTNYISFQINELNYRREGIGRN-LPRRRSW 187


>At2g17000.1 68415.m01960 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 849

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 316 VLKFAAHTGRNTNCWTFHSW 375
           VL    HT RN   W+ H W
Sbjct: 248 VLSLGLHTWRNATLWSLHLW 267


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 368 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPI 460
           TP   TNQ++ A  E     +LDP     PI
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPI 650


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,819,655
Number of Sequences: 28952
Number of extensions: 182961
Number of successful extensions: 378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)