Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H19
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                   127   5e-30
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         29   2.6  
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 29   2.6  
SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)       27   7.9  
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                 27   7.9  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   7.9  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score =  127 bits (306), Expect = 5e-30
 Identities = 60/107 (56%), Positives = 73/107 (68%)
 Frame = +1

Query: 145 RINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVI 324
           R + +  HPGYFGK+GMR++H+ RN    P +NLDK+W+LVSEQ R  Y +  DG VPVI
Sbjct: 67  RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVI 126

Query: 325 NIVXXXXXXXXXXXXXPKQPVIVKAKFFSKTAEQKIKAVGGVCVLSA 465
           ++V             PKQPVIVKAKFFS+ AE KIKAVGG CVL A
Sbjct: 127 DVVKAGYYKVLGKGLLPKQPVIVKAKFFSRRAEDKIKAVGGACVLMA 173


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 166  GTCPC*FCDGAHH--QHYHVHQDAYGACRYD 80
            G CP   CDG+ H   H+  HQ + G  R D
Sbjct: 939  GVCPTPGCDGSGHVSGHWRTHQSSAGCPRND 969


>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 291 CICHR-WQGACNQHCQRWLLQVXXXXXXXXXXCHCESEILLK 413
           C C++ W+G+CN  C R               CHC +  L K
Sbjct: 389 CTCNKKWEGSCNAICTR-TSNATSSCVTLGDQCHCPNVTLPK 429


>SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 133 HHQHYHVHQDAYGACRYD 80
           HHQH+H+  D+   C+ D
Sbjct: 132 HHQHHHIKTDSQERCQID 149


>SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)
          Length = 268

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 157 DKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKL 255
           D Y   Y GK G+ N    RN D   V +LD++
Sbjct: 170 DAYLRSYLGKHGVANIRNLRNDDVIIVCDLDEI 202


>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 583

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 3   TRGRRKYGHLQEEDQEVERTREPWSWSYR 89
           TRG+   G L+EE  E ERT E  S   R
Sbjct: 417 TRGKSHEGRLEEERPEEERTHEERSHKER 445


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 133 HHQHYHVHQDAYGACRYDHDH 71
           HHQH+H H   +    + H+H
Sbjct: 213 HHQHHHHHHHQHNHHHHHHNH 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,137
Number of Sequences: 59808
Number of extensions: 251190
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)