Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H19
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   144   2e-35
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   143   6e-35
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    47   6e-10
At2g04620.1 68415.m00470 cation efflux family protein potential ...    29   1.6  
At5g38920.1 68418.m04707 hypothetical protein                          28   2.8  
At2g16100.1 68415.m01846 hypothetical protein                          28   3.7  
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi...    27   4.9  
At1g21200.1 68414.m02650 expressed protein                             27   4.9  
At3g55760.2 68416.m06196 expressed protein                             27   6.5  
At3g55760.1 68416.m06195 expressed protein                             27   6.5  
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z...    27   8.6  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  144 bits (350), Expect = 2e-35
 Identities = 75/149 (50%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
 Frame = +1

Query: 22  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 201
           MAT+ KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 202 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVXXXXXXXXXXXXXPK- 378
           +H  RNK FCP++NLDKLW+LV E  + K  S+ D  VP+I++              P+ 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLPEN 117

Query: 379 QPVIVKAKFFSKTAEQKIKAVGGVCVLSA 465
           +P +VKAK  SKTAE+KIK  GG  VL+A
Sbjct: 118 KPFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  143 bits (346), Expect = 6e-35
 Identities = 73/149 (48%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
 Frame = +1

Query: 22  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 201
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 202 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVXXXXXXXXXXXXXPK- 378
           +H  RNK FCP++NLDKLW+LV E  +   A +T   VP+I++              P+ 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVK---AKSTKDNVPLIDVTQHGFFKVLGKGHLPEN 117

Query: 379 QPVIVKAKFFSKTAEQKIKAVGGVCVLSA 465
           +P +VKAK  SKTAE+KIK  GG  VL+A
Sbjct: 118 KPFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 47.2 bits (107), Expect(2) = 6e-10
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +1

Query: 22  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 195
           M TS+KKTR LR HVS                       H R    +  PG  G   +GM
Sbjct: 1   MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39

Query: 196 RNYHMRRNKDFCPVLNLDKLWTLV 267
           R +H  RNK +C ++NLDKLW++V
Sbjct: 40  RYFHKLRNKFYCQIVNLDKLWSMV 63



 Score = 33.1 bits (72), Expect(2) = 6e-10
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 379 QPVIVKAKFFSKTAEQKIKAVGGVCVLS 462
           +PV+VKAK  S T E+KIK  G   VL+
Sbjct: 73  KPVVVKAKLVSNTDEKKIKEAGSAVVLT 100


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 133 HHQHYHVHQDAYGACRYDHDH 71
           H  H+H H   +  C ++HDH
Sbjct: 597 HDHHHHSHSHKHEECNHNHDH 617


>At5g38920.1 68418.m04707 hypothetical protein
          Length = 192

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 138 PSQNQHGQVPPWVLWQTW 191
           P     G V PW+LW+ W
Sbjct: 12  PQLGDDGMVAPWILWRLW 29


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 135 APSQNQHGQVPPWVLWQTW 191
           +P  +Q  Q+P W+LW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 634

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   GRRKYGHLQEEDQEVERTREPWSWSYRQA 95
           G RK   + EED+E+++ RE W    + A
Sbjct: 554 GDRKKEVVDEEDEEIKKLREEWGEEVKNA 582


>At1g21200.1 68414.m02650 expressed protein
          Length = 443

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 142 DGAHHQHYHVHQDAYGACRYDHDHG 68
           DG  H  Y     AYG CR +H  G
Sbjct: 289 DGDEHDEYEEQHYAYGDCRVNHYGG 313


>At3g55760.2 68416.m06196 expressed protein
          Length = 578

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 183 QTWYEKLPHEKKQGFLPCF 239
           +TWYEK PH    GF  CF
Sbjct: 547 ETWYEKFPH---FGFFHCF 562


>At3g55760.1 68416.m06195 expressed protein
          Length = 578

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 183 QTWYEKLPHEKKQGFLPCF 239
           +TWYEK PH    GF  CF
Sbjct: 547 ETWYEKFPH---FGFFHCF 562


>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 309

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 136 AHHQHYHVHQDAYG 95
           +HH+H+H H + YG
Sbjct: 136 SHHRHHHYHHNQYG 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,242,058
Number of Sequences: 28952
Number of extensions: 166495
Number of successful extensions: 509
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)