Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H18
         (412 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.5  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   2.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   2.0  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   2.7  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   2.7  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   3.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   8.2  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -1

Query: 301 SRSWSQSFYVNI*EHFKHVSAPRGCVAHSCNTELHAHGAPEGSD-GNTERYEEA-RGAEH 128
           +R + Q +  ++    +H + P   + H  +  +  H  P   +   +  Y    +   H
Sbjct: 17  ARDFVQGYPASVQPLPRHFNPPSDKLHHPIHQTVIYHNNPRDPNRARSVSYSTVIQSVPH 76

Query: 127 PGSE-----GDRHSRHGGH 86
           P +E     GD+H RH  H
Sbjct: 77  PETEKDWGDGDKHDRHERH 95


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 403 EAVEE-PQVPTREFY*SLNVANRDEDRSYESLESDSRSWSQSF 278
           EA EE P + +R F       + DE+ S++      R   QSF
Sbjct: 49  EADEEAPVLKSRSFGRKRKSISSDEENSFQGKHKSRRKAPQSF 91


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -1

Query: 148 EARGAEHPGSEGDRHSRHGGH-LRVTQYSHIGHIHEHI 38
           E   A  PG +G  HS H  H +     +H+     H+
Sbjct: 27  EPHVAHRPGLQGLHHSPHLNHAMHPYHANHVNPTANHV 64


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 132 SAPRASSYRSVLPSLPSGAP 191
           +AP  S  R  LP+LP   P
Sbjct: 383 AAPAVSKARQFLPALPGYVP 402


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 132 SAPRASSYRSVLPSLPSGAP 191
           +AP  S  R  LP+LP   P
Sbjct: 208 AAPAVSKARQFLPALPGYVP 227


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 403 EAVEEPQVPTREFY*SLNVANRDEDRSYESLESDS 299
           E    P V  R    S NVAN+  D  YE   S++
Sbjct: 331 EEFVHPTVAKRGSITSKNVANKIRDFYYEGPNSEN 365


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
          protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 85 LRVTQYSHIGHIHEHIEAR 29
          L ++ Y+   H H H++AR
Sbjct: 43 LGMSPYASSQHHHHHLQAR 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,665
Number of Sequences: 336
Number of extensions: 1846
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)