Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H18
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 31 0.070
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 27 0.86
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 1.1
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 2.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.6
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 26 2.6
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 2.6
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 2.6
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 6.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 24 8.0
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 24 8.0
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 31.1 bits (67), Expect = 0.070
Identities = 21/91 (23%), Positives = 40/91 (43%)
Frame = +2
Query: 2 HEAIAVPLITSLYVFMNVAYMTVLSYAEMTSVPAVAVAFGARVLGPASFLIPLGVAIATF 181
H + + +I+ L V +N+ Y T + + F + A+ ++ L + +
Sbjct: 264 HRVLLLYIISVLVVGINLPYNTPGLDGDSVRMSPFTFVFKKFGVPGAASIMNLVILSSAL 323
Query: 182 GCAMSVQFGVTRVCYTAARSGHMLEVFSYVN 274
+ TR+ Y+ A+SGH +VFS N
Sbjct: 324 SAGNHSLYAGTRLLYSLAKSGHAPKVFSKCN 354
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 27.5 bits (58), Expect = 0.86
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -1
Query: 181 EGSDGNTERYEEARGAEHPGS-EGDRHSRHGGHLRVTQYSHIGHIHE 44
E S+ N ++ E+ H + E D+ H GH + H H H+
Sbjct: 267 ESSNSNLKKSSESGSTNHHNNHESDKDLHHEGHHHHHHHHHHHHSHD 313
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -1
Query: 409 HCEAVEEPQVPTREFY*SLNVANRDEDRSYESLESDSRSWSQSFYVNI*EHFKHV 245
H E EE E+ +V +D+DRSY ++ W +V + +H+
Sbjct: 1835 HLENNEETDWKFEEWRQMQDVVKQDQDRSYIGFHFENSKWESLRHVRVNRVGEHI 1889
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 2.0
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = -2
Query: 207 PNCTLMAHPKVAMATPSGMRKLAGPSTRAPKATATAGTEVISA*LSTVI*ATFMNT*RLV 28
PN H ++ M P G GPS A T T ++S L T + AT T L
Sbjct: 921 PNNKFFEHARLHMHCPEGSISKDGPS-----AGITMATSLLSLALDTPVPATTAMTGELT 975
Query: 27 MRG 19
+ G
Sbjct: 976 LTG 978
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 111 SPSEPGCSAPRASSYRSVLPSLPSGAP*ACSSVLQECATQPRGADTCLKCSHMLT 275
S S+P S+ +S++ S P+ S + + SSV+ ++ + + L S + T
Sbjct: 183 SSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLST 237
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 25.8 bits (54), Expect = 2.6
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Frame = +2
Query: 140 ASFLIP--LGVA---IATFGCAMSVQFGVTRVCYTAA 235
A+FL+P G+ I + ++ VQFGV RV Y+AA
Sbjct: 198 AAFLVPHYFGICAGHIISLVLSLPVQFGVGRVYYSAA 234
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +2
Query: 251 LEVFSYVNIKRLTPAPAVAFQAFITSVFISVGNIKTLIEFASWYLWFFYGLAM 409
++ F V K ++ P + TS V I L WYLW +G+ +
Sbjct: 192 VDTFHVVLKKFISETPNLYASLLDTSPTTVVARIPDLTVIYRWYLWVGFGVGL 244
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 294 AGVSLFMLTYENTSSMCPLRAAV*HTLVTPNC 199
+ +S ++ +Y N CP + HTL T +C
Sbjct: 946 SALSSYLSSYANDEPPCPTDEEIQHTLCTIDC 977
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 6.1
Identities = 22/95 (23%), Positives = 41/95 (43%)
Frame = +2
Query: 26 ITSLYVFMNVAYMTVLSYAEMTSVPAVAVAFGARVLGPASFLIPLGVAIATFGCAMSVQF 205
+ SL + +T LS + P + A++ G L + + I+ A + +
Sbjct: 324 VVSLLISGRDERLTTLSATAAS--PFILALMDAKIRGLPHVLNAV-ILISVLTAANGITY 380
Query: 206 GVTRVCYTAARSGHMLEVFSYVNIKRLTPAPAVAF 310
+R ++ A GH + F YV+ + P A+AF
Sbjct: 381 TGSRTLHSMAEQGHAPKWFKYVD-REGRPLLAMAF 414
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 141 AGPSTRAPKATATAGTEVISA 79
A PST P +T T+G++V +A
Sbjct: 134 ASPSTFLPDSTTTSGSQVSNA 154
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.2 bits (50), Expect = 8.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 144 ASSYRSVLPSLPSGAP*ACSSVLQECATQPRGADTCLKCS 263
A S R LPSLPS C + L++ T T + S
Sbjct: 154 AQSSRYTLPSLPSSPSYNCPTTLRKIHTNTSSNGTSRRVS 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,444
Number of Sequences: 5004
Number of extensions: 30347
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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