Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H18
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258... 37 0.005
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 36 0.010
06_03_1047 - 27133869-27134345,27134444-27134701,27134841-271350... 35 0.022
03_05_0456 - 24498212-24499581,24502660-24503071 35 0.022
12_01_0233 + 1750772-1752058 35 0.029
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 35 0.029
06_03_0363 + 19904002-19905792 35 0.029
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395... 35 0.029
01_01_0771 - 5982826-5983327,5983424-5984772 33 0.12
07_01_0443 - 3351490-3351513,3351568-3351591,3353339-3354142 32 0.16
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 31 0.36
05_03_0256 - 11110636-11110875 31 0.36
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 31 0.36
12_01_0492 + 3908154-3908678 31 0.47
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009 30 0.83
01_06_0723 + 31501900-31502808,31502846-31503295 29 1.1
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 29 1.4
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 29 1.4
10_02_0187 - 6447189-6448532 29 1.9
12_02_0770 - 23007202-23007333,23007475-23007555,23007642-230077... 28 3.3
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 28 3.3
04_04_1241 + 32009641-32010309 27 4.4
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332 27 4.4
01_06_0809 - 32137202-32138128,32138247-32138631,32139503-321396... 27 4.4
12_02_0130 + 14026460-14027017 27 5.8
07_03_1058 + 23631819-23631943,23632032-23632101,23632196-236333... 27 5.8
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335 27 5.8
04_01_0501 - 6558120-6559312,6559441-6559518,6559818-6559877,656... 27 5.8
02_05_0460 - 29224525-29224620,29225525-29226625 27 5.8
08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065 27 7.7
07_03_1323 + 25813770-25814006,25814147-25814287,25814465-258145... 27 7.7
06_01_0822 + 6212957-6213488,6213552-6213607 27 7.7
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 27 7.7
>11_01_0345 +
2579602-2579836,2581262-2581484,2582822-2583173,
2583894-2584125,2584683-2585266
Length = 541
Score = 37.1 bits (82), Expect = 0.005
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Frame = +2
Query: 14 AVPLITSLYVFMNVAYMTVLSYAEMTSVPAVAVAF-GARVLGPASFLIPLGVAIATFGCA 190
+V L+T LY M + +L Y + + + AF G+ G S +I G ++
Sbjct: 247 SVVLVTLLYCLMAASMSMLLPYDAIDTEAPFSGAFKGSSGWGWVSNVIGAGASLGILTSL 306
Query: 191 MSVQFGVTRVCYTAARSGHMLEVFSYVNIKRLTPAPAVAFQAFITSVFISVGNIKTLIEF 370
M G R RSG M + V+ TP A AF T+ + L+
Sbjct: 307 MVAMLGQARYLCVIGRSGVMPAWLAKVHPCTATPVNASAFLGVFTAALALFTELDVLLNL 366
Query: 371 AS-WYLWFFYGLA 406
S L+ FY +A
Sbjct: 367 VSIGTLFVFYMVA 379
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 36.3 bits (80), Expect = 0.010
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +2
Query: 14 AVPLITSLYVFMNVAYMTVLSYAEMTSVPAVAVAF-GARVLGPASFLIPLGVAIATFGCA 190
+V L+T LY M + +L Y + + + AF G+ G S +I G ++
Sbjct: 247 SVVLVTLLYCLMAASMSMLLPYDAIDTEAPFSGAFKGSSGWGWVSNVIGAGASLGILTSL 306
Query: 191 MSVQFGVTRVCYTAARSGHMLEVFSYVNIKRLTPAPAVAF 310
M G R RSG M + VN + TP A AF
Sbjct: 307 MVAMLGQARYLCVIGRSGVMPAWLARVNPRTATPVNASAF 346
>06_03_1047 -
27133869-27134345,27134444-27134701,27134841-27135041,
27135242-27135584,27135674-27135732,27136256-27136581,
27136753-27136849,27137072-27137182,27137691-27138305,
27139578-27139880
Length = 929
Score = 35.1 bits (77), Expect = 0.022
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 152 IPLGVAIATFGCAMSVQFGVTRVCYTAARSGHML-EVFSYVNIKRLTPAPAVAFQAFITS 328
IP V+ A G M++ GV + S +L ++ S V +++ AP F ++ S
Sbjct: 429 IPKEVSSAVIGGTMNLH-GVLHIQANKVGSETVLSQIISLVETAQMSKAPIQKFADYVAS 487
Query: 329 VFISVGNIKTLIEFASWYLWFFYG 400
+F+ + ++I F W+L + G
Sbjct: 488 IFVPIVITLSMITFLVWFLCGWVG 511
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 35.1 bits (77), Expect = 0.022
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Frame = +2
Query: 14 AVPLITSLYVFMNVAYMTVLSYAEMTSVPAVAVAFGARVLGPASFLIPLGVAIATFGCAM 193
A+ L T+LY + V ++ Y E+ +VAF R +G A +++ G +
Sbjct: 307 AMALTTALYCALAVTLCLMVPYGEIDPDAPFSVAFADRGMGWAKYVVAFGALKGMTTVLL 366
Query: 194 SVQFGVTRVCYTAARSGHMLEVFSYVNIKRLTPAPAVAFQAFITSV---FISVGNIKTLI 364
G R AR+ M + V+ TP A T+V F + + L+
Sbjct: 367 VSAVGQARYLTHIARTHMMPPWLARVHPGTGTPVNATVAMLLATAVIAFFTDLNVLSNLL 426
Query: 365 EFASWYLWFFYGLAMV 412
++ +++ +A++
Sbjct: 427 SISTLFIFMLVAVALL 442
>12_01_0233 + 1750772-1752058
Length = 428
Score = 34.7 bits (76), Expect = 0.029
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = +2
Query: 8 AIAVPLITSLYVFMNVAYMTVLSYAEMTSVPAVAVAFGARVLGPASFL----IPLGVAIA 175
A+++ S Y++++V+++ +L +V ++AVAF AS L I GVA+A
Sbjct: 173 ALSLWFSNSAYIYLSVSFIQMLKALMPVAVYSLAVAFRTDSFRRASMLNMLGISAGVAVA 232
Query: 176 TFGCAMSVQFGV-TRVCYTAARSGHMLEVFSYVNIK--RLTPAPAVAFQAFITSVFISV 343
+G A FGV ++ AA + ++ + + K L P ++ + A VF+++
Sbjct: 233 AYGEARFDAFGVMLQLAAVAAEATRLVLIQILLTSKGMSLNPITSLYYIAPCCLVFLTL 291
>11_01_0236 +
1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 34.7 bits (76), Expect = 0.029
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = +2
Query: 8 AIAVPLITSLYVFMNVAYMTVLSYAEMTSVPAVAVAFGARVLGPASFL----IPLGVAIA 175
A+++ S Y++++V+++ +L +V ++AVAF AS L I GVA+A
Sbjct: 133 ALSLWFSNSAYIYLSVSFIQMLKALMPVAVYSLAVAFRTDSFRRASMLNMLGISAGVAVA 192
Query: 176 TFGCAMSVQFGV-TRVCYTAARSGHMLEVFSYVNIK--RLTPAPAVAFQAFITSVFISV 343
+G A FGV ++ AA + ++ + + K L P ++ + A VF+++
Sbjct: 193 AYGEARFDAFGVMLQLAAVAAEATRLVLIQILLTSKGMSLNPITSLYYIAPCCLVFLTL 251
>06_03_0363 + 19904002-19905792
Length = 596
Score = 34.7 bits (76), Expect = 0.029
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Frame = +2
Query: 26 ITSLYVFMNVAYMTVLSYAEMTSVPAVAVAFGARVLGPASFLIPLGVAIATFGCAMSVQF 205
IT +Y M++A + + Y E+ + A +VAF A + A +++ LG +
Sbjct: 312 ITVVYCLMSLALVGMQRYTEIDANAAYSVAFAAAGMRWARYVVALGALKGMTSGLLVGAL 371
Query: 206 GVTRVCYTAARSGHMLEVFSYVNIKRLTP---APAVAFQAFITSVFISVGNIKTLIEFAS 376
G R AR+ + F+ V+ TP AV A ++F S+ + ++ ++
Sbjct: 372 GQARYTTQIARTHMIPPYFALVHPTTGTPIYATVAVTLGAACVALFSSLDVLASVSSIST 431
Query: 377 WYLWFFYGLAMV 412
+++ +A++
Sbjct: 432 LFIFALVAVALL 443
>02_01_0541 -
3950336-3950353,3950660-3951061,3951174-3951431,
3951554-3951754,3951861-3952203,3952286-3952344,
3952757-3953082,3953283-3953745,3954180-3954794,
3955600-3955896
Length = 993
Score = 34.7 bits (76), Expect = 0.029
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 164 VAIATFGCAMSVQFGVTRVCYTAARSGHML-EVFSYVNIKRLTPAPAVAFQAFITSVFIS 340
V+ G M++ G+ + T SG +L ++ S V +++ AP F ++ +F+
Sbjct: 516 VSSIVIGGTMNLH-GILHIQATKVGSGTVLSQIISLVETAQMSKAPIQKFADYVAGIFVP 574
Query: 341 VGNIKTLIEFASWYL 385
+ +L+ F +W+L
Sbjct: 575 IVVTLSLVTFIAWFL 589
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 32.7 bits (71), Expect = 0.12
Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Frame = +2
Query: 14 AVPLITSLYVFMNVAYMTVLSYAEMTSVPAVAVAFGARVLGPASFLIPLGVAIATFGCAM 193
++ +IT++Y M + + Y + A +VAF + A +++ LG +
Sbjct: 312 SMSVITAIYCVMALVLSMMQPYTAIDRSAAYSVAFSNVGMRWAQYVVALGALKGMTTVLL 371
Query: 194 SVQFGVTRVCYTAARSGHMLEVFSYVNIKRLTPAPA---VAFQAFITSVFISVGNIKTLI 364
G R ARS + VF+ V+ + TP A +A +F S+ + +L+
Sbjct: 372 VGALGQARYTTHIARSHIIPPVFALVHPRTGTPVHATVLIAAAGACIGLFSSLDVLSSLL 431
Query: 365 EFASWYLWFFYGLAMV 412
++ +++ A++
Sbjct: 432 SVSTLFIFMMMATALL 447
>07_01_0443 - 3351490-3351513,3351568-3351591,3353339-3354142
Length = 283
Score = 32.3 bits (70), Expect = 0.16
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 241 APRGCVAHSCNTELHAHGA-PEGSDGNTERYEEARGAEHPGSEGDRHSR 98
A +A S + LHAHG P+ DG+ ++ + EH +E DR SR
Sbjct: 120 ASLSALAASYLSLLHAHGIDPDDDDGSNQQEQLQPPVEHLDAEADRESR 168
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 31.1 bits (67), Expect = 0.36
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -1
Query: 334 EDRSYESLESDS-RSWSQSFYVNI*EHFKHVSAPRGCVAHSCNTELHAHGAPEGSDGNTE 158
++R E DS +S QSFY N+ F H S +A S T+ HG+P + +TE
Sbjct: 429 KERPATDREDDSPQSSDQSFYSNVDSSFSHRSELE--LAASA-TDSPLHGSPSSTGPSTE 485
Query: 157 RYEEARGA 134
+ EA A
Sbjct: 486 QLLEADAA 493
>05_03_0256 - 11110636-11110875
Length = 79
Score = 31.1 bits (67), Expect = 0.36
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -1
Query: 199 HAHGAPEGSDGNTERYEEARGAEHPGSEGDRHSRHGGHLRVTQYSHIGHIHEHIEARDER 20
H G EGS E + G ++ G RH R G + + +HIG + R ++
Sbjct: 13 HWRGGGEGSGDGIGEEEASGGGKNVGGRMSRHPRSGATQQRGKGNHIG-VGRKRPNRKDQ 71
Query: 19 NRDR 8
+RDR
Sbjct: 72 DRDR 75
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 31.1 bits (67), Expect = 0.36
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 143 SFLIPLGVAIATF--GCAMSVQFGVTRVCYTAARSGHMLEVFSYVNIKRLTPAPAVAFQ 313
S IP G+ I ++ GC + C A R+G L S+ NI RL A+ F+
Sbjct: 459 SLKIPKGIKIPSYCNGCDCEGDCANNKNCSCAQRNGSDLPYVSHKNIGRLVEPKAIVFE 517
>12_01_0492 + 3908154-3908678
Length = 174
Score = 30.7 bits (66), Expect = 0.47
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 128 VLGPASFLIPLGVAIATFGCAMSVQFGVTRVCYT 229
VLG ASFL PL A+A + + G VC T
Sbjct: 55 VLGSASFLCPLRFAVAIMAAGVGLPSGTMLVCST 88
>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
Length = 768
Score = 29.9 bits (64), Expect = 0.83
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -1
Query: 169 GNTERYEEARGAEHP-----GSEGDRHSRHGGHLRVTQYSHIG 56
G+ +R +E RG+ P G+ GD + HGG RV S G
Sbjct: 285 GDHDREDELRGSRRPERGERGNRGDDGAHHGGRARVRDRSRRG 327
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 397 VEEPQVPTREFY*SLNVANRDEDRSYESLESDSRSWS 287
+++P P+ F+ L V NRD ++ S SD+ SWS
Sbjct: 229 IDQPP-PSANFFRVLIVYNRDRFTAFRSYSSDTGSWS 264
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 241 APRGCVAHSCNTELHAHGAPEGSDGNTERYEEARGAEHPGSEGDRHS 101
A RG V GA G+ +R E+ +G+ PG+EG + S
Sbjct: 64 ARRGAVGRRA-ARARVGGAAAGTGSAAQRREQGKGSHQPGTEGRQSS 109
>11_06_0506 -
24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +2
Query: 71 LSYAEMTSVPAVAVAFGARVLGPASFLIPLGVAIATFGCAMSVQFGVTRVCYTAARSGHM 250
L Y + +VPAV A PA+ L+ A+ +F C V GV R A H+
Sbjct: 90 LQYLRLGAVPAVVAALAGPGASPAA-LVQAAAAVGSFAC--GVDDGV-RAVLAAGAVAHL 145
Query: 251 LEVFSYVNIK 280
+ ++ + K
Sbjct: 146 TRLLAHPDEK 155
>10_02_0187 - 6447189-6448532
Length = 447
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 397 VEEPQVPTREFY*SLNVANRDEDRSYESLESDSRSWS 287
++ P+ + +F+ L + NRD ++ S SD+ SWS
Sbjct: 226 LDRPRHASSDFFRVLIIYNRDRFTAFRSYSSDTCSWS 262
>12_02_0770 -
23007202-23007333,23007475-23007555,23007642-23007742,
23007855-23008455,23008742-23009365,23010294-23010377
Length = 540
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -1
Query: 238 PRGCVAHSCNTELHAHGAPEGSDGNTERYEEARGAEHPGSEGDRHSRHGGHLRVTQYSHI 59
PR + +LH+ G+ G G++ + E GA S G+R S G R + I
Sbjct: 140 PRSSHKTKGSNQLHSEGSGGGGGGSSRKGESGHGA--VVSAGNRESSTGDKTRKLKLK-I 196
Query: 58 GHIHEHIEAR 29
G I + A+
Sbjct: 197 GGIRRSVPAK 206
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 106 HSRHGGHLRVTQYSHIGHI-HEHIEARDE 23
H+ +G V+ Y H+GHI +EH A+DE
Sbjct: 103 HNPYGAPETVSFYIHVGHIPNEHNLAKDE 131
>04_04_1241 + 32009641-32010309
Length = 222
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 106 GGRLRSPGARPRELPHTARC 165
GGR+R P PRE PH RC
Sbjct: 15 GGRIRRP--LPRERPHLTRC 32
>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
Length = 190
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 157 RYEEARGAEHPGSEGDRHSRHGGHLRVTQYSH 62
R E++ GAE G +GD++ H L +T + +
Sbjct: 140 REEKSAGAEGGGRDGDKNGHHQHQLEMTPHKN 171
>01_06_0809 -
32137202-32138128,32138247-32138631,32139503-32139607,
32139737-32139770,32139856-32140098,32140187-32140247
Length = 584
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 133 EHPGSEGDRH-SRHGGHLRVTQYSHIGHIHEH 41
++P + D+H +RHGG +Y H H HEH
Sbjct: 107 KYPATARDKHRNRHGGCRHRHRYKH-EHEHEH 137
>12_02_0130 + 14026460-14027017
Length = 185
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 302 VAFQAFITSVFISVGNIKTLIEFASWYLWFFYGLA 406
V F+ V+ SV L+ A W+ W+++G A
Sbjct: 44 VVLYLFVGHVWASVATA-VLLAAAGWFTWYYFGAA 77
>07_03_1058 +
23631819-23631943,23632032-23632101,23632196-23633368,
23633469-23634266
Length = 721
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 133 EHPGSEGDRHSRHGGHLRVTQYSH 62
EHPG GD + GHL + SH
Sbjct: 457 EHPGLSGDEKASLCGHLECRKLSH 480
>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
Length = 377
Score = 27.1 bits (57), Expect = 5.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 91 LRAGCGGRLRSPGARPRELPHTARCCH-RYLRVRHERAVRCYKSVLHSR 234
L GC +L + RP PHT H RY +RH R R + ++ SR
Sbjct: 72 LHVGCHPQLLTVTLRPPS-PHTRSSVHHRYAMLRHHRKDR--REIVFSR 117
>04_01_0501 -
6558120-6559312,6559441-6559518,6559818-6559877,
6560000-6560083,6560407-6560566
Length = 524
Score = 27.1 bits (57), Expect = 5.8
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Frame = +1
Query: 31 EPLCVHECGLYDCTELRGDDLRAGCGG------RLRSPGARPRE 144
+P+C G YD L GD G GG L SP A PRE
Sbjct: 141 KPICDTSFGKYDICVLDGDTRAQGGGGAGAAVVTLVSPRAAPRE 184
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 27.1 bits (57), Expect = 5.8
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 4 RGDRGSSHHEPLCVHECGLYDCTELRGDDLRAGCGGRLRSPGARPRELPHTARCCHRYLR 183
RG G++ P + L + G + GCG + SPG L A CHR
Sbjct: 149 RGGEGAAGEAPTWRYRECLKNHAARMGAHVLDGCGEFMSSPGDGAAALACAACGCHRSFH 208
Query: 184 VRHERAV 204
R E AV
Sbjct: 209 -RREPAV 214
>08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065
Length = 393
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 145 ARGAEHPGSEGDRHSRHGGHLRVTQYSHIGHIHEHIEA 32
A G E G+E H GH+ V ++ GH H H+ +
Sbjct: 176 AAGVEEGGAE------HAGHVHVHTHATHGHAHGHVHS 207
>07_03_1323 +
25813770-25814006,25814147-25814287,25814465-25814536,
25815022-25815135,25815431-25815484,25815644-25815745,
25815830-25815907,25816113-25816182,25816577-25816647,
25816764-25816856,25817306-25817374
Length = 366
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +1
Query: 13 RGSSHHEPLCVHECGLYDCTELRGDDLRAGCGGRLRSPGARPR 141
+G H P L DC + AG GG PG+ PR
Sbjct: 23 QGGRHFPPFLAPSSRLTDCKKAAAHVDLAGAGGVATVPGSWPR 65
>06_01_0822 + 6212957-6213488,6213552-6213607
Length = 195
Score = 26.6 bits (56), Expect = 7.7
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Frame = -1
Query: 283 SFYVNI*EHFKHVSAPRGCVAHSCNTEL-HAHGAPEGS--DGNTERYEEARGAEHPGSEG 113
S ++N HF + G V NTE HA G DG+ RYE P G
Sbjct: 26 SGFINPMFHFARLLRSAGFVVTFVNTERNHALMLSRGRKRDGDGIRYEAIPDGLSPPERG 85
Query: 112 DRHSRHGGHLRVTQYSHIGHIHEHI 38
+ G L + + GH+ E I
Sbjct: 86 AQDDYGFGLLHAVRANGPGHLRELI 110
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 124 GSEGDRHSRHGGHLRVTQYSHIGHIHEH 41
G G+ H R GH +T H+ H H H
Sbjct: 19 GGSGEHHMR--GHAHLTNCIHLRHHHAH 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,122,061
Number of Sequences: 37544
Number of extensions: 248308
Number of successful extensions: 1140
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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