Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H18
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.11 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          24   0.77 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   9.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   9.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 219 TLVTPNCTLMAHPKVAMATPSGMRKLAGPSTRA 121
           T VTP+C    +  +A A P    KLA PS++A
Sbjct: 95  TSVTPSCRRQRY-NIAAANPLLAEKLAAPSSQA 126



 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/30 (30%), Positives = 10/30 (33%)
 Frame = -1

Query: 130 HPGSEGDRHSRHGGHLRVTQYSHIGHIHEH 41
           HP      H +HG H          H H H
Sbjct: 327 HPHRGSSPHHQHGNHTMGPTMGPPHHHHHH 356


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 121 SPGARPRELPHTARCCHRYLRVRHE 195
           S G+R R    T+ C  RY   RHE
Sbjct: 216 SLGSRSRSFQRTSSCHSRYEDSRHE 240


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 363 IRVLMLPTEMKTEVMKAWKA 304
           +  LM+P E+   +  +WKA
Sbjct: 87  VTFLMMPLEIGWAITVSWKA 106


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 163 CCHRYLRVRHERAVRCYKS 219
           CC   +R R++ A RC  S
Sbjct: 408 CCPGRVRRRYQPAFRCKPS 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,647
Number of Sequences: 438
Number of extensions: 2437
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)