Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H15
         (490 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   2.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   4.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.9  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   7.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 86  RANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPN 223
           +A+ A+ P     P+G  T +T+A+P  +   +   Q     PT N
Sbjct: 208 KASPAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGN 253


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 123 LGGSFGQLARFARRPPRTLLQVTNRTIA 40
           +GG+ G+L R +    R+ L    RTIA
Sbjct: 168 IGGTTGKLRRRSTAASRSRLAAFKRTIA 195


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 350 PSGISTRSRRRNSVILLR*RGRNSGALSIPTTS*QSNRYLE 472
           PSGIS+     N  + L+    NSG LS+  T+  S  + +
Sbjct: 474 PSGISSLLNLDNQQLELKPIDLNSGDLSMLETNNLSETFTQ 514


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 46  GAVCYLKERP 75
           GAVC+L+ RP
Sbjct: 135 GAVCHLETRP 144


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 415 EQWGAIDPYNFVTVE 459
           ++WG I+  NF  VE
Sbjct: 73  DEWGDIEKGNFAEVE 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,775
Number of Sequences: 336
Number of extensions: 2279
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)