Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H15
(490 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74043-8|CAA98538.1| 368|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z73102-6|CAA97412.1| 522|Caenorhabditis elegans Hypothetical pr... 30 1.0
AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage ... 30 1.0
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 1.8
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 4.2
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 4.2
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 4.2
Z81124-6|CAB03375.1| 335|Caenorhabditis elegans Hypothetical pr... 27 5.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 27 5.5
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 27 5.5
Z78540-3|CAB01735.2| 482|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81487-1|CAB03995.2| 288|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z68493-7|CAA92793.1| 339|Caenorhabditis elegans Hypothetical pr... 27 9.7
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 9.7
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 9.7
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z74043-8|CAA98538.1| 368|Caenorhabditis elegans Hypothetical
protein T19B10.6 protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = -1
Query: 298 PCLHPGCCGRFASYDARILNDQIPCIRCRSPNRILNQILVSCDRFRGGRGVCCSIA*G-P 122
PC P F +DAR + C + R+ + RGGRG CSI P
Sbjct: 16 PC--PDIHALFIQFDARFFGGSLACCEVKWSPRMYACAGICSYEIRGGRGGLCSIRLSKP 73
Query: 121 WRLVRPAREI 92
+RP ++
Sbjct: 74 LLTLRPRSDL 83
>Z73102-6|CAA97412.1| 522|Caenorhabditis elegans Hypothetical
protein B0035.5 protein.
Length = 522
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 432 DSAPLFLPRHLNNITEFLRLLLVEMPEGFEPLSEKDEIIERDQPV-LVYIQDVVDGSHLT 256
D+A + N++ + L L+ +E P +DE ++ + +V ++DVV G ++
Sbjct: 257 DTAGIIRDVMQNHLMQILTLVAMEKPASLNAEDIRDEKVKVLKAAKVVELKDVVVGQYIA 316
Query: 255 TPEF 244
+PEF
Sbjct: 317 SPEF 320
>AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage a
trois) tfiih subunitprotein 1 protein.
Length = 310
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 235 DRSEFWRRKMRTVHNILDVDKDGLISFNDFVLFAERFKSL 354
D+ F RRK+R ++N+ D + L F D + ERF+++
Sbjct: 67 DKETFLRRKLRKIYNLKQDDFENLREFGD---YQERFETV 103
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 107 PNEPPRPSGDATANTTAAPKPIA 175
P PP P+ ATA APKP+A
Sbjct: 847 PAPPPPPATQATAAPVTAPKPVA 869
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 107 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 283
P PP P + NT + + G ++ + + TP+P +S PST+S
Sbjct: 188 PPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 246
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 107 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 283
P PP P + NT + + G ++ + + TP+P +S PST+S
Sbjct: 188 PPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 246
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 107 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 283
P PP P + NT + + G ++ + + TP+P +S PST+S
Sbjct: 188 PPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 246
>Z81124-6|CAB03375.1| 335|Caenorhabditis elegans Hypothetical
protein T21B4.8 protein.
Length = 335
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 483 DACPSKYLFDCYEVVGIDSAPLFLPRHLNNITEFLRLLLVEMPEGFEPLSEKDEII 316
D PS+ +F C V+GI S P F +L + E +L +P E E +I
Sbjct: 139 DKVPSRVVFICVNVIGILSFPTFQLFNLQDQFEVKIEVLKTLPCPAEDFFEPSTLI 194
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 101 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 220
S+P+ P SG ++ +T AAP P E+ P R P P
Sbjct: 538 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 577
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 101 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 220
S+P+ P SG ++ +T AAP P E+ P R P P
Sbjct: 364 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 403
>Z78540-3|CAB01735.2| 482|Caenorhabditis elegans Hypothetical
protein C33G3.5 protein.
Length = 482
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +1
Query: 277 NILDVDKDGLISFNDFVLFAERFKSLGHLDEKQAKEFSDIIKM 405
++LD K+G +S +D + ++ +++ D KEF +++ +
Sbjct: 199 HLLDSHKNGTLSTSDTLELNKKLQNIAFFDRPDDKEFREMVDL 241
>Z81487-1|CAB03995.2| 288|Caenorhabditis elegans Hypothetical
protein C54E10.2 protein.
Length = 288
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +1
Query: 283 LDVDKDGLISFNDFVLFAER 342
LD D+DGL++++D + F ++
Sbjct: 244 LDCDRDGLVTYDDMIRFFQK 263
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical
protein C14C10.5 protein.
Length = 1908
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 473 LLNTCSTVTKL*GSIAPHCSSHVI 402
LL C ++ L G+I P C SH+I
Sbjct: 867 LLGACFSLPLLEGTILPLCDSHII 890
>Z68493-7|CAA92793.1| 339|Caenorhabditis elegans Hypothetical
protein C33A12.10 protein.
Length = 339
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 425 PHCSSHVILIISLNSFACF 369
P + HV L+ISL+ F CF
Sbjct: 65 PGKNQHVFLVISLSQFTCF 83
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 26.6 bits (56), Expect = 9.7
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +2
Query: 125 PSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSG----VVRCEPSTTSWM* 292
PS + ++ +P P G+ Q ++P+P+ +G + E ST S
Sbjct: 384 PSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPT 443
Query: 293 TRTG*SRSMISSFSLRGSNPSGISTRSRRRNS 388
TG + S+ + + + + PSG S ++ NS
Sbjct: 444 GSTGSTFSVATEVTSQSTVPSGSSLGTQSTNS 475
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 26.6 bits (56), Expect = 9.7
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +2
Query: 125 PSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSG----VVRCEPSTTSWM* 292
PS + ++ +P P G+ Q ++P+P+ +G + E ST S
Sbjct: 591 PSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPT 650
Query: 293 TRTG*SRSMISSFSLRGSNPSGISTRSRRRNS 388
TG + S+ + + + + PSG S ++ NS
Sbjct: 651 GSTGSTFSVATEVTSQSTVPSGSSLGTQSTNS 682
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 26.6 bits (56), Expect = 9.7
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +2
Query: 125 PSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSG----VVRCEPSTTSWM* 292
PS + ++ +P P G+ Q ++P+P+ +G + E ST S
Sbjct: 591 PSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPT 650
Query: 293 TRTG*SRSMISSFSLRGSNPSGISTRSRRRNS 388
TG + S+ + + + + PSG S ++ NS
Sbjct: 651 GSTGSTFSVATEVTSQSTVPSGSSLGTQSTNS 682
>AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical
protein B0205.10 protein.
Length = 455
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 107 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 226
P P P A A T AP P+ ++ P PTP A
Sbjct: 119 PQVAPAPETPAPAPETPAPAPVQETPQVVA-PAPEPTPEA 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,244,626
Number of Sequences: 27780
Number of extensions: 235666
Number of successful extensions: 1088
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -