Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H14
(501 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024847-3|AAF60854.1| 195|Caenorhabditis elegans Hypothetical ... 124 3e-29
AC024847-2|AAO21415.1| 197|Caenorhabditis elegans Hypothetical ... 124 3e-29
U29488-6|AAA68776.1| 161|Caenorhabditis elegans Inhibitor of ce... 33 0.15
AF016441-2|AAB65912.2| 417|Caenorhabditis elegans Hypothetical ... 30 1.1
Z70684-4|CAA94599.1| 234|Caenorhabditis elegans Hypothetical pr... 29 2.5
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensor... 27 5.8
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 27 5.8
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 27 5.8
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 27 5.8
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 27 5.8
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 27 5.8
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 27 5.8
>AC024847-3|AAF60854.1| 195|Caenorhabditis elegans Hypothetical
protein Y65B4BR.5a protein.
Length = 195
Score = 124 bits (300), Expect = 3e-29
Identities = 63/90 (70%), Positives = 70/90 (77%)
Frame = +3
Query: 231 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 410
G I +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46 GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105
Query: 411 YIVFGEAKIEDLSQQATMAAAERFKAPETA 500
YI+FGEAKIEDL+Q A M+A E K A
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREA 135
>AC024847-2|AAO21415.1| 197|Caenorhabditis elegans Hypothetical
protein Y65B4BR.5b protein.
Length = 197
Score = 124 bits (300), Expect = 3e-29
Identities = 63/90 (70%), Positives = 70/90 (77%)
Frame = +3
Query: 231 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 410
G I +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46 GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105
Query: 411 YIVFGEAKIEDLSQQATMAAAERFKAPETA 500
YI+FGEAKIEDL+Q A M+A E K A
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLKPTREA 135
>U29488-6|AAA68776.1| 161|Caenorhabditis elegans Inhibitor of cell
death protein 1 protein.
Length = 161
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +3
Query: 207 GGISNPIAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDV 386
GG P ++ K + +KK + + KL + + G+ V + K + NNP V
Sbjct: 23 GGKGTPRRKKKVIHKTAAA-DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKV 81
Query: 387 FKNPHSDTYIVFGEAKIEDLSQ 452
+ ++T+ V G A + +++
Sbjct: 82 QTSVPANTFSVTGSADNKQITE 103
>AF016441-2|AAB65912.2| 417|Caenorhabditis elegans Hypothetical
protein M03F8.5 protein.
Length = 417
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 225 IAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINN 377
I G+D S+A+ R KK ++ +LG + N+V + N+L + N
Sbjct: 205 ILGLDSTSRAQFGRNMKKTSGLLDRLGSVVFNAYNKVGDNSAVNMLPIFAN 255
>Z70684-4|CAA94599.1| 234|Caenorhabditis elegans Hypothetical
protein F28D1.4 protein.
Length = 234
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -2
Query: 272 LATRLLCFGH--DINACDGVRNTP--CPRCACIFKFRD 171
+A + C G+ D C GVRNTP C R KF+D
Sbjct: 167 VACKFGCVGYNTDEECCRGVRNTPETCDRSTTAQKFKD 204
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 317 YKLEAKFAHDFARLLLATRLLCFGHDINACDGVRNTPCPRCACIFKFRDG 168
YK+ KF + R+L+ + +L G D+N D V N P +F R G
Sbjct: 439 YKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAG 488
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -2
Query: 428 LSKYYVSVRV-----WVLEDIRIVDHKEYVL*FPYCNSVYTLYKL 309
L YYV R LE IR K+ ++ FP CNSV YK+
Sbjct: 232 LKNYYVECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKI 276
>AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform j protein.
Length = 255
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 TRPGCPPNSNFYKRNYHF---VTKNPNMPELTEL 95
T GC NSN + R H K PN PE+ EL
Sbjct: 75 TFSGCGGNSNRFMRRAHCRNRCVKQPNKPEVQEL 108
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 TRPGCPPNSNFYKRNYHF---VTKNPNMPELTEL 95
T GC NSN + R H K PN PE+ EL
Sbjct: 75 TFSGCGGNSNRFMRRAHCRNRCVKQPNKPEVQEL 108
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 TRPGCPPNSNFYKRNYHF---VTKNPNMPELTEL 95
T GC NSN + R H K PN PE+ EL
Sbjct: 75 TFSGCGGNSNRFMRRAHCRNRCVKQPNKPEVQEL 108
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 TRPGCPPNSNFYKRNYHF---VTKNPNMPELTEL 95
T GC NSN + R H K PN PE+ EL
Sbjct: 75 TFSGCGGNSNRFMRRAHCRNRCVKQPNKPEVQEL 108
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 TRPGCPPNSNFYKRNYHF---VTKNPNMPELTEL 95
T GC NSN + R H K PN PE+ EL
Sbjct: 75 TFSGCGGNSNRFMRRAHCRNRCVKQPNKPEVQEL 108
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 TRPGCPPNSNFYKRNYHF---VTKNPNMPELTEL 95
T GC NSN + R H K PN PE+ EL
Sbjct: 75 TFSGCGGNSNRFMRRAHCRNRCVKQPNKPEVQEL 108
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 TRPGCPPNSNFYKRNYHF---VTKNPNMPELTEL 95
T GC NSN + R H K PN PE+ EL
Sbjct: 75 TFSGCGGNSNRFMRRAHCRNRCVKQPNKPEVQEL 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,580,087
Number of Sequences: 27780
Number of extensions: 234325
Number of successful extensions: 778
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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