Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_H13
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    49   1e-07
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    28   0.34 
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    24   5.5  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    23   9.6  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    23   9.6  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    23   9.6  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 49.2 bits (112), Expect = 1e-07
 Identities = 25/68 (36%), Positives = 45/68 (66%)
 Frame = +3

Query: 9   HSSLREVSQVINTALEVHFPERSVRVIAEPGRYFAAAAYTLATMIYAKREVVGKDSEGED 188
           + S   V+ +I +AL+ +F + S+RVI+EPGR+F ++++TLA  + AKR++       +D
Sbjct: 269 NDSFDGVADLIRSALDTYF-DPSIRVISEPGRFFVSSSFTLAVNVIAKRKL-------DD 320

Query: 189 EMHTMYFI 212
           E   MY++
Sbjct: 321 EEKVMYYV 328



 Score = 44.4 bits (100), Expect = 4e-06
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +1

Query: 214 NDGVYGSFNCILYDHQHVVAEPL 282
           NDGVYGS NCIL+DHQH VA  L
Sbjct: 329 NDGVYGSLNCILFDHQHPVARVL 351


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 27.9 bits (59), Expect = 0.34
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 206 VHRVHLILPLAV---LTHHLSFGVYHGGEGVCRGGEVPARFS 90
           VHR H + PLA    LT++  +   HGG    + G V A  S
Sbjct: 45  VHRKHAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAAIS 86


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -1

Query: 221 PSLYEVHRVHLILPLAVLTHHLSFGV----YHGGEGVCRGGEVP-ARFSDDAHAAL 69
           PS+ E+ R H ++ +A +  H S       Y+G + +C    +P    S  AH  L
Sbjct: 155 PSVEEIKRAHSVVRIAAIEVHYSMLFREIEYNGVKKLCHDLSIPLVAHSPLAHGLL 210


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 155 SFGVYHGGEGVCRGGEV 105
           +F +Y G EG+ +GG++
Sbjct: 227 AFAIYEGYEGLVQGGDM 243


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 149  GVYHGGEGVCR 117
            G YHGG+GV R
Sbjct: 1170 GEYHGGDGVIR 1180


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 104 PARFSDDAHAALREVHFE 51
           PA   +DA  A  EVHFE
Sbjct: 59  PAEGDEDAEPASPEVHFE 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,362
Number of Sequences: 5004
Number of extensions: 18284
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)