Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H13
(299 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0142 - 21107878-21109104 48 1e-06
02_03_0240 - 16739628-16740369,16740392-16740978 47 3e-06
04_01_0200 + 2400929-2402161 41 2e-04
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 28 1.2
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 27 2.7
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 27 2.7
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 26 4.7
07_01_0798 - 6271261-6271725 26 4.7
06_03_1407 - 29954374-29954738,29955939-29958558 26 4.7
04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800 26 4.7
01_06_0746 - 31636024-31641396 26 4.7
12_01_0750 - 6754126-6755248,6755331-6755791 26 6.3
02_02_0636 + 12463660-12465204 26 6.3
09_04_0418 - 17406313-17407419 25 8.3
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 25 8.3
06_01_0630 - 4598804-4599295,4599627-4599965,4600002-4600039,460... 25 8.3
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 25 8.3
04_03_0811 - 19909128-19912214 25 8.3
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 25 8.3
>09_06_0142 - 21107878-21109104
Length = 408
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 24 EVSQVINTALEVHFPERS-VRVIAEPGRYFAAAAYTLATMIYAKR 155
E + VIN ALE HF + V VI EPGRYFA A+TLA + KR
Sbjct: 254 EAAAVINRALERHFGDLPCVEVIGEPGRYFAETAFTLAARVIGKR 298
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 214 NDGVYGSFNCILYDHQHVVAEPL 282
+DG+YGS NCIL DH PL
Sbjct: 309 DDGLYGSLNCILMDHYVPRPRPL 331
>02_03_0240 - 16739628-16740369,16740392-16740978
Length = 442
Score = 46.8 bits (106), Expect = 3e-06
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 12 SSLREVSQVINTALEVHFP----ERSVRVIAEPGRYFAAAAYTLATMIYAKR 155
S+ +E S VI+ AL HF V VIAEPGRYFA A+ LA I+ KR
Sbjct: 266 STFQEASAVISAALARHFGGDDMPSGVEVIAEPGRYFAETAFALAARIFGKR 317
>04_01_0200 + 2400929-2402161
Length = 410
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 24 EVSQVINTALEVHFPER--SVRVIAEPGRYFAAAAYTLATMIYAKR 155
+ + VIN AL +F + +V +I EPGRYFA A+TLA + KR
Sbjct: 260 DAAAVINRALGRYFGDLLPTVELIGEPGRYFAETAFTLAARVIGKR 305
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 214 NDGVYGSFNCILYD 255
+DGVYGS NCIL D
Sbjct: 316 DDGVYGSLNCILLD 329
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -1
Query: 173 VLTHHLSFGVYHGGEGVCRGGEVPARFSDDAHAALREVHFECRVD 39
+LT S H GE GG+ +DDA ALRE E +D
Sbjct: 66 ILTKRSSSLSTHSGEVALPGGKAEEGDADDAATALREAKEEIGLD 110
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 63 FPERSVRVIAEPGRYFAAAAYTLATMIYAKREVVG 167
+P +++ PG Y AA A T M+YA R G
Sbjct: 383 YPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPPG 417
>11_01_0236 +
1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 63 FPERSVRVIAEPGRYFAAAAYTLATMIYAKREVVG 167
+P +++ PG Y AA A T M+YA R G
Sbjct: 791 YPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPPG 825
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 140 HGGEGVCRGGEVPARFSDDAHAALREVHFECRVD 39
H GE GG+ +DDA ALRE E +D
Sbjct: 77 HSGEVSLPGGKAEEGDADDAATALREAKEEIGLD 110
>07_01_0798 - 6271261-6271725
Length = 154
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 122 CRGGEVPARFSDDAHAALREVHFECRVDHLRHLTKARV 9
C GG+ P + H LREV CR D LR + + V
Sbjct: 72 CGGGDPPGVRARCCHQ-LREVAARCRCDALRAMVEVLV 108
>06_03_1407 - 29954374-29954738,29955939-29958558
Length = 994
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 140 HGGEGVCRGGEVPARFSDDAHAALREVHFEC 48
HGG+G G E AR + +A L +H +C
Sbjct: 790 HGGKGGHLGWEARARVAAEAACGLCYLHHDC 820
>04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800
Length = 456
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 48 ALEVHFPERSVRVIAEPGRYFAAAAYTLATMIYA-KREVVGKDSEGEDEMH 197
++ ++F + R +A PG Y AA+ A + A REV G D E H
Sbjct: 361 SVPIYFGAPNARDLAPPGSYIDGAAFASAEELAAYVREVAG-DPAAYAEFH 410
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 154 ERWWVRTARGRMRCTRCTSYNDGVYGSFNCIL 249
+R W T G + +R + ++ ++ FNC L
Sbjct: 1266 DRLWFLTRGGISKASRVINISEDIFAGFNCTL 1297
>12_01_0750 - 6754126-6755248,6755331-6755791
Length = 527
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 131 EGVCRGGEVPARFSDDAHAALRE 63
EG R EV RFSDD AA+RE
Sbjct: 444 EGRVRIEEVLRRFSDDEVAAMRE 466
>02_02_0636 + 12463660-12465204
Length = 514
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = -1
Query: 161 HLSFGVYHGGEGVCRGGEVPARFSDDAHAALREVHFECRVDH 36
H + G++HG G+ G F+ A C VDH
Sbjct: 275 HSNRGLFHGAAGLLGLGRGALSFASQLRAVYGHAFSYCLVDH 316
>09_04_0418 - 17406313-17407419
Length = 368
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 107 VPARFSDDAHAALREVHFECRVD 39
VPA + DDA AALR V CR D
Sbjct: 170 VPAAY-DDAFAALRAVVAACRPD 191
>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 134 GEGVCRGGEVPARFSDDAHAALREVH 57
GE +C GGE + H L+E H
Sbjct: 1545 GESICAGGEAHCLHELNNHEILKECH 1570
>06_01_0630 -
4598804-4599295,4599627-4599965,4600002-4600039,
4600145-4600460,4600541-4600794,4601586-4601651,
4603422-4603617
Length = 566
Score = 25.4 bits (53), Expect = 8.3
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +1
Query: 211 YNDGVYGSFNCILYDHQHVVAEPLN 285
++ +Y SF+ + + H H++ PL+
Sbjct: 262 FSTALYFSFSTLTFSHGHIIKSPLS 286
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 182 PLAVLTHHLSFGVYHGGEGVCRGGEVPARFSDDAHAALREVHFECRVD 39
P +LT + H GE GG+V +D ALRE E +D
Sbjct: 81 PRVILTKRAASLSSHSGEVSLPGGKVEEGDADATATALREAKEEIGLD 128
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 163 WVRTARGRMRCTRCTSYNDGVYGSFN 240
WV +A R C++ S D VY SF+
Sbjct: 99 WVVSATSREVCSKSKSEGDDVYESFS 124
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 155 SFGVYHGGEGVCRGGEVPARFSDDAHAALREVHFECRVDHLRHLTKAR 12
S G GG G RGG VP S + ++ + R + R T+ R
Sbjct: 1352 SRGGSRGGRGRSRGGRVPRGISISSRIGFKDENEASRKNTRRGRTRGR 1399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,442,214
Number of Sequences: 37544
Number of extensions: 161624
Number of successful extensions: 451
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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