Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H13
(299 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0) 59 8e-10
SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0) 58 2e-09
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 30 0.40
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.70
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_15147| Best HMM Match : C1_2 (HMM E-Value=3) 27 3.7
SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3) 26 4.9
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0) 26 6.5
SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062) 25 8.6
>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
Length = 635
Score = 58.8 bits (136), Expect = 8e-10
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +3
Query: 15 SLREVSQVINTALEVHFPERS-VRVIAEPGRYFAAAAYTLATMIYAKREVVGKDSEGED 188
+ E+ IN LE HFP S VR+IAEPGRY++++++TLA +Y++REV ED
Sbjct: 425 TFEEICTTINPLLEEHFPPSSGVRIIAEPGRYYSSSSFTLAVNVYSRREVQSSSVLAED 483
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 214 NDGVYGSFNCILYDHQHVVAEPLNVS 291
NDGVYGSFNC+++DH V A P+ S
Sbjct: 500 NDGVYGSFNCLIFDHATVEAIPVKES 525
>SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0)
Length = 210
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +3
Query: 27 VSQVINTALEVHFP-ERSVRVIAEPGRYFAAAAYTLATMIYAKREVVGKDSEGEDE 191
++ VIN AL+ +FP + V +IAEPGRY+ A+A+TLA I AK+ +V + S +DE
Sbjct: 1 ITSVINPALDKYFPVDSGVTIIAEPGRYYVASAFTLAVNIIAKKVMVNEQSGSDDE 56
Score = 42.7 bits (96), Expect = 5e-05
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 214 NDGVYGSFNCILYDHQHV 267
NDGVYGSFNCIL+DH HV
Sbjct: 70 NDGVYGSFNCILFDHAHV 87
>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
Length = 1410
Score = 29.9 bits (64), Expect = 0.40
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -1
Query: 197 VHLILPLAVLTHHLSFGV-YHGGEGVCRGGEVPARFSDDAHAALREVHFECRVDHLRHLT 21
V+ + L+ +T S G Y GG+ V R G+V F D H+ E + R + LR++
Sbjct: 730 VNTEIELSAVTLFGSLGNRYKGGQSVVRTGDVEFNFMDSPHSTGGE-GVDRRDEKLRNVK 788
Query: 20 KARV 9
KA V
Sbjct: 789 KASV 792
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 164 HHLSFGVYHGG-EGVCRGGEVPARFSDDAHAALREVHFEC---RVDHLRHL 24
HH+S + H +G+ V S +A ++E+H C RV HL HL
Sbjct: 282 HHVSNAMSHNACQGMQEIHHVSNAMSHNACQGMQEIHHACKNGRVQHLEHL 332
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 46 RHSKCTSRSAACASSLNRAG 105
RH +C +RS ACA LN G
Sbjct: 1895 RHGQCDTRSGACACDLNWRG 1914
>SB_15147| Best HMM Match : C1_2 (HMM E-Value=3)
Length = 163
Score = 26.6 bits (56), Expect = 3.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 187 MRCTRCTSYNDGVYGSFNC 243
+RC C ++ + YG F+C
Sbjct: 107 VRCAECANFTNPTYGEFHC 125
>SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3)
Length = 682
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 170 LTHHLSFGVYHGGEGVCRGGEVPARFSDD 84
++H + V+ G EG C GE+ ++D
Sbjct: 97 MSHEARYSVHEGPEGTCLYGELDISLTED 125
>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 176 AVLTHHLSFGVYHGGEG-VCRGGEVPARFSDDAHAALREVHFECRVDHL 33
A + +++ G Y G G +C+ + + D A LRE +C +D +
Sbjct: 307 AEMIAYIAMGFYIGITGYICKANLISPPYLDTAGKNLREAIIDCPLDRI 355
>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
Length = 636
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 205 TSYNDGVYGSFNCILYDHQHVVAEPLNVSC 294
T+Y G G ++ LYD+ + E ++SC
Sbjct: 54 TNYRCGYQGVYDLYLYDNGQIGVEHSHISC 83
>SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +1
Query: 160 WWVRTARGRMRCTRCTSYNDG 222
WWV RG +R T DG
Sbjct: 83 WWVSHERGSLRANAATGARDG 103
>SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062)
Length = 485
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 3 TRHSSLREVSQVINTALEVHFPERSVRVIAEPGRYFAAAAYTLATMIYAKREVVGKDSEG 182
TR LR +++ L H PER++RV + R ++ + + YAK +++ +G
Sbjct: 55 TRTLELRVLAKFHLNLLSTH-PERTLRVSKDVYRKLVSSDWITSQNNYAKWDILTSSRDG 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,609,981
Number of Sequences: 59808
Number of extensions: 169887
Number of successful extensions: 429
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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