Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_H13
(299 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64854-5|AAB18317.1| 422|Caenorhabditis elegans Hypothetical pr... 48 2e-06
U03059-1|AAA88795.1| 422|Caenorhabditis elegans ornithine decar... 46 5e-06
Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical pr... 29 0.47
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 29 0.47
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 29 0.47
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 29 0.47
U88177-3|AAB42292.1| 191|Caenorhabditis elegans Hypothetical pr... 29 0.62
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ... 29 0.82
U97191-5|AAB52428.1| 477|Caenorhabditis elegans Hypothetical pr... 27 2.5
AL117202-28|CAI46621.1| 325|Caenorhabditis elegans Hypothetical... 27 2.5
AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical... 27 2.5
AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ... 27 2.5
AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein. 27 2.5
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 26 4.4
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 26 4.4
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 26 4.4
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 26 4.4
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr... 25 7.6
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ... 25 7.6
AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical ... 25 7.6
>U64854-5|AAB18317.1| 422|Caenorhabditis elegans Hypothetical
protein K11C4.4 protein.
Length = 422
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +3
Query: 9 HSSLREVSQVINTALEVHFPERSVRVIAEPGRYFAAAAYTLATMIYAKREV----VGKDS 176
H+ ++++ I AL+ FP+ + R+IAEPGR+FAA ++L I EV + KD
Sbjct: 247 HNPFEKIAETIRDALDEFFPDTNKRLIAEPGRFFAAGPFSLVANIIHATEVPASKITKDP 306
Query: 177 EGEDEMHTMYFI 212
+ + MY+I
Sbjct: 307 KDCADHGYMYYI 318
Score = 46.0 bits (104), Expect = 5e-06
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 214 NDGVYGSFNCILYDHQHVVAEPL 282
NDGVYGSFNCIL+DH H + PL
Sbjct: 319 NDGVYGSFNCILFDHAHPIGSPL 341
>U03059-1|AAA88795.1| 422|Caenorhabditis elegans ornithine
decarboxylase protein.
Length = 422
Score = 46.0 bits (104), Expect = 5e-06
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1
Query: 214 NDGVYGSFNCILYDHQHVVAEPL 282
NDGVYGSFNCIL+DH H + PL
Sbjct: 319 NDGVYGSFNCILFDHAHPIGSPL 341
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +3
Query: 9 HSSLREVSQVINTALEVHFPERSVRVIAEPGRYFAAAAYTLATMIYAKREV----VGKDS 176
H+ ++++ I AL+ FP+ + R+ EPGR+FAA ++L I EV + KD
Sbjct: 247 HNPFEKIAETIRDALDEFFPDTNKRLYREPGRFFAAGPFSLVANIIHATEVPASKITKDP 306
Query: 177 EGEDEMHTMYFI 212
+ + MY+I
Sbjct: 307 KDCADHGYMYYI 318
>Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical
protein F20E11.7 protein.
Length = 357
Score = 29.5 bits (63), Expect = 0.47
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 163 WVRTARGRMRCTRCTSYNDGVYGSFNC 243
W+R RGR+ C CT++ D + C
Sbjct: 263 WLRLKRGRLPCQTCTAFMDPMVPEATC 289
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 221 PSLYEVH--RVHLILPLAVLTHHLSFGVYHGGEGVCRGGEVP 102
P Y V RVHL+L L V+ L HGG V E+P
Sbjct: 807 PLKYSVQWLRVHLLLKLIVVLEKLMNSAIHGGSSVFNLTEIP 848
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 221 PSLYEVH--RVHLILPLAVLTHHLSFGVYHGGEGVCRGGEVP 102
P Y V RVHL+L L V+ L HGG V E+P
Sbjct: 807 PLKYSVQWLRVHLLLKLIVVLEKLMNSAIHGGSSVFNLTEIP 848
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 221 PSLYEVH--RVHLILPLAVLTHHLSFGVYHGGEGVCRGGEVP 102
P Y V RVHL+L L V+ L HGG V E+P
Sbjct: 807 PLKYSVQWLRVHLLLKLIVVLEKLMNSAIHGGSSVFNLTEIP 848
>U88177-3|AAB42292.1| 191|Caenorhabditis elegans Hypothetical
protein F53E10.6 protein.
Length = 191
Score = 29.1 bits (62), Expect = 0.62
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 99 GRYFAAAAYTLATMIYAKREVVGKDSEGEDEM 194
G+ F + + + + AK+EV G+D +GED+M
Sbjct: 144 GKNFDSDRFADSGYVGAKKEVKGEDDDGEDQM 175
>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
protein Y73F8A.5 protein.
Length = 1019
Score = 28.7 bits (61), Expect = 0.82
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 154 ERWWVRTARGRMRCTRCTSYNDGVYGSFNC 243
ERW V RG M+C+ + G+ SF+C
Sbjct: 42 ERWRVAVPRGGMQCSNLPTPRRGLNCSFSC 71
>U97191-5|AAB52428.1| 477|Caenorhabditis elegans Hypothetical
protein F53F10.2a protein.
Length = 477
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 214 NDGVYGSFNCILYDHQHVVAEPLNV 288
NDGVYGSF C D + + +PL+V
Sbjct: 330 NDGVYGSFGCKQMDIK-PLCKPLDV 353
>AL117202-28|CAI46621.1| 325|Caenorhabditis elegans Hypothetical
protein Y47D3A.23b protein.
Length = 325
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 88 MTRTLRSGKCTSSAVLITCDTSRRLEC 8
M R L+SGKC S+A L D + +EC
Sbjct: 282 MIRNLKSGKCMSTANLKPGDNAIVVEC 308
>AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical
protein Y47D3A.23a protein.
Length = 579
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 88 MTRTLRSGKCTSSAVLITCDTSRRLEC 8
M R L+SGKC S+A L D + +EC
Sbjct: 536 MIRNLKSGKCMSTANLKPGDNAIVVEC 562
>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
protein Y66H1B.3 protein.
Length = 1084
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 279 RFSDDVLMIVENAVEGPVHTIVI 211
+ DDV V +A+EGPV IV+
Sbjct: 368 KVGDDVKFAVVDAIEGPVEAIVV 390
>AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein.
Length = 579
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 88 MTRTLRSGKCTSSAVLITCDTSRRLEC 8
M R L+SGKC S+A L D + +EC
Sbjct: 536 MIRNLKSGKCMSTANLKPGDNAIVVEC 562
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 116 GGEVPARFSDDAHAALRE 63
GGE+PA+ +D+AH L++
Sbjct: 696 GGEMPAKENDEAHPELKQ 713
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 116 GGEVPARFSDDAHAALRE 63
GGE+PA+ +D+AH L++
Sbjct: 697 GGEMPAKENDEAHPELKQ 714
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 116 GGEVPARFSDDAHAALRE 63
GGE+PA+ +D+AH L++
Sbjct: 697 GGEMPAKENDEAHPELKQ 714
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 116 GGEVPARFSDDAHAALRE 63
GGE+PA+ +D+AH L++
Sbjct: 697 GGEMPAKENDEAHPELKQ 714
>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical protein
F29C12.3 protein.
Length = 1631
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 71 LREVHFECRVDHLRHLTKARV 9
+ E+HF CR+ HLT RV
Sbjct: 1400 IMELHFSCRLREKYHLTAFRV 1420
>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 71 LREVHFECRVDHLRHLTKARV 9
+ E+HF CR+ HLT RV
Sbjct: 1400 IMELHFSCRLREKYHLTAFRV 1420
>AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical
protein F55A3.1 protein.
Length = 958
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 125 VCRGGEVPARFSDDAHAALREVHFECRVDHLRHLTK 18
VCRG E + +++ VH EC V+ L++ K
Sbjct: 55 VCRGNEGSLYYPCLCTGSIKYVHQECLVEWLKYSKK 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,723,751
Number of Sequences: 27780
Number of extensions: 117414
Number of successful extensions: 292
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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